Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=27475

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=27500",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=27450",
    "results": [
        {
            "id": 27467,
            "identifier": "220296",
            "identifier_type": "int",
            "name": "HEPACAM",
            "properties": {
                "url": "http://identifiers.org/ncbigene/220296",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "hepatic and glial cell adhesion molecule"
            },
            "metanode": "Gene"
        },
        {
            "id": 27468,
            "identifier": "C0853263",
            "identifier_type": "str",
            "name": "Blood bicarbonate",
            "properties": {
                "url": "http://identifiers.org/umls/C0853263",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 27469,
            "identifier": "200830",
            "identifier_type": "int",
            "name": "LOC200830",
            "properties": {
                "url": "http://identifiers.org/ncbigene/200830",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "uncharacterized LOC200830"
            },
            "metanode": "Gene"
        },
        {
            "id": 27470,
            "identifier": "340393",
            "identifier_type": "int",
            "name": "TMEM249",
            "properties": {
                "url": "http://identifiers.org/ncbigene/340393",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "transmembrane protein 249"
            },
            "metanode": "Gene"
        },
        {
            "id": 27471,
            "identifier": "390431",
            "identifier_type": "int",
            "name": "OR4K2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/390431",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "olfactory receptor, family 4, subfamily K, member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 27472,
            "identifier": "DB06771",
            "identifier_type": "str",
            "name": "Besifloxacin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB06771",
                "inchi": "InChI=1S/C19H21ClFN3O3/c20-15-16-12(18(25)13(19(26)27)9-24(16)11-4-5-11)7-14(21)17(15)23-6-2-1-3-10(22)8-23/h7,9-11H,1-6,8,22H2,(H,26,27)/t10-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=QFFGVLORLPOAEC-SNVBAGLBSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 27473,
            "identifier": "C0239375",
            "identifier_type": "str",
            "name": "Numbness of limbs",
            "properties": {
                "url": "http://identifiers.org/umls/C0239375",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 27474,
            "identifier": "GO:0052594",
            "identifier_type": "str",
            "name": "aminoacetone:oxygen oxidoreductase(deaminating) activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0052594",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 27475,
            "identifier": "5947",
            "identifier_type": "int",
            "name": "RBP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5947",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "retinol binding protein 1, cellular"
            },
            "metanode": "Gene"
        },
        {
            "id": 27476,
            "identifier": "10614",
            "identifier_type": "int",
            "name": "HEXIM1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10614",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "hexamethylene bis-acetamide inducible 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 27477,
            "identifier": "729442",
            "identifier_type": "int",
            "name": "GAGE12H",
            "properties": {
                "url": "http://identifiers.org/ncbigene/729442",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "G antigen 12H"
            },
            "metanode": "Gene"
        },
        {
            "id": 27478,
            "identifier": "89839",
            "identifier_type": "int",
            "name": "ARHGAP11B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/89839",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "Rho GTPase activating protein 11B"
            },
            "metanode": "Gene"
        },
        {
            "id": 27479,
            "identifier": "GO:0010875",
            "identifier_type": "str",
            "name": "positive regulation of cholesterol efflux",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010875",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 27480,
            "identifier": "4432",
            "identifier_type": "int",
            "name": "MSBP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4432",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "description": "minisatellite binding protein 2, 77kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 27481,
            "identifier": "DB01108",
            "identifier_type": "str",
            "name": "Trilostane",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01108",
                "inchi": "InChI=1S/C20H27NO3/c1-18-7-6-14-12(13(18)3-4-15(18)22)5-8-20-17(24-20)16(23)11(10-21)9-19(14,20)2/h12-15,17,22-23H,3-9H2,1-2H3/t12-,13-,14-,15-,17+,18-,19+,20+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=KVJXBPDAXMEYOA-CXANFOAXSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 27482,
            "identifier": "54470",
            "identifier_type": "int",
            "name": "ARMCX6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54470",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "armadillo repeat containing, X-linked 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 27483,
            "identifier": "GO:0001618",
            "identifier_type": "str",
            "name": "virus receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001618",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 27484,
            "identifier": "93517",
            "identifier_type": "int",
            "name": "SDR42E1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/93517",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "short chain dehydrogenase/reductase family 42E, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 27485,
            "identifier": "204851",
            "identifier_type": "int",
            "name": "HIPK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/204851",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "homeodomain interacting protein kinase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 27486,
            "identifier": "126375",
            "identifier_type": "int",
            "name": "ZNF792",
            "properties": {
                "url": "http://identifiers.org/ncbigene/126375",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 792"
            },
            "metanode": "Gene"
        },
        {
            "id": 27487,
            "identifier": "6901",
            "identifier_type": "int",
            "name": "TAZ",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6901",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "tafazzin"
            },
            "metanode": "Gene"
        },
        {
            "id": 27488,
            "identifier": "C0005697",
            "identifier_type": "str",
            "name": "Neurogenic bladder",
            "properties": {
                "url": "http://identifiers.org/umls/C0005697",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 27489,
            "identifier": "56923",
            "identifier_type": "int",
            "name": "NMUR2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56923",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "neuromedin U receptor 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 27490,
            "identifier": "GO:0042427",
            "identifier_type": "str",
            "name": "serotonin biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042427",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 27491,
            "identifier": "1605",
            "identifier_type": "int",
            "name": "DAG1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1605",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "dystroglycan 1 (dystrophin-associated glycoprotein 1)"
            },
            "metanode": "Gene"
        }
    ]
}