Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=29625

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=29650",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=29600",
    "results": [
        {
            "id": 29619,
            "identifier": "285555",
            "identifier_type": "int",
            "name": "STPG2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/285555",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "sperm-tail PG-rich repeat containing 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 29620,
            "identifier": "DB08828",
            "identifier_type": "str",
            "name": "Vismodegib",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08828",
                "inchi": "InChI=1S/C19H14Cl2N2O3S/c1-27(25,26)13-6-7-14(17(21)11-13)19(24)23-12-5-8-16(20)15(10-12)18-4-2-3-9-22-18/h2-11H,1H3,(H,23,24)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=BPQMGSKTAYIVFO-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 29621,
            "identifier": "GO:0008622",
            "identifier_type": "str",
            "name": "epsilon DNA polymerase complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008622",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 29692,
            "identifier": "GO:0009395",
            "identifier_type": "str",
            "name": "phospholipid catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009395",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 29622,
            "identifier": "DB01172",
            "identifier_type": "str",
            "name": "Kanamycin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01172",
                "inchi": "InChI=1/C18H36N4O11/c19-2-6-10(25)12(27)13(28)18(30-6)33-16-5(21)1-4(20)15(14(16)29)32-17-11(26)8(22)9(24)7(3-23)31-17/h4-18,23-29H,1-3,19-22H2/t4-,5+,6-,7-,8+,9-,10-,11-,12+,13-,14-,15+,16-,17-,18-/s2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=SBUJHOSQTJFQJX-LCMAVPODNA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 29623,
            "identifier": "DB00796",
            "identifier_type": "str",
            "name": "Candesartan",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00796",
                "inchi": "InChI=1S/C24H20N6O3/c1-2-33-24-25-20-9-5-8-19(23(31)32)21(20)30(24)14-15-10-12-16(13-11-15)17-6-3-4-7-18(17)22-26-28-29-27-22/h3-13H,2,14H2,1H3,(H,31,32)(H,26,27,28,29)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HTQMVQVXFRQIKW-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 29624,
            "identifier": "105369591",
            "identifier_type": "int",
            "name": "LOC105369591",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105369591",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "uncharacterized LOC105369591"
            },
            "metanode": "Gene"
        },
        {
            "id": 29625,
            "identifier": "105373986",
            "identifier_type": "int",
            "name": "LOC105373986",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105373986",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "uncharacterized LOC105373986"
            },
            "metanode": "Gene"
        },
        {
            "id": 29626,
            "identifier": "407977",
            "identifier_type": "int",
            "name": "TNFSF12-TNFSF13",
            "properties": {
                "url": "http://identifiers.org/ncbigene/407977",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "TNFSF12-TNFSF13 readthrough"
            },
            "metanode": "Gene"
        },
        {
            "id": 29627,
            "identifier": "D018886",
            "identifier_type": "str",
            "name": "Aphasia, Conduction",
            "properties": {
                "url": "http://identifiers.org/mesh/D018886",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 29628,
            "identifier": "C0338575",
            "identifier_type": "str",
            "name": "Superior sagittal sinus thrombosis",
            "properties": {
                "url": "http://identifiers.org/umls/C0338575",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 29629,
            "identifier": "C0266241",
            "identifier_type": "str",
            "name": "Congenital absence of bile ducts",
            "properties": {
                "url": "http://identifiers.org/umls/C0266241",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 29630,
            "identifier": "GO:0097177",
            "identifier_type": "str",
            "name": "mitochondrial ribosome binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0097177",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 29631,
            "identifier": "79825",
            "identifier_type": "int",
            "name": "EFCC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79825",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "EF-hand and coiled-coil domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 29632,
            "identifier": "387911",
            "identifier_type": "int",
            "name": "C1QTNF9B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/387911",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "C1q and tumor necrosis factor related protein 9B"
            },
            "metanode": "Gene"
        },
        {
            "id": 29633,
            "identifier": "GO:0042391",
            "identifier_type": "str",
            "name": "regulation of membrane potential",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042391",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 29634,
            "identifier": "974",
            "identifier_type": "int",
            "name": "CD79B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/974",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "CD79b molecule, immunoglobulin-associated beta"
            },
            "metanode": "Gene"
        },
        {
            "id": 29635,
            "identifier": "259292",
            "identifier_type": "int",
            "name": "TAS2R46",
            "properties": {
                "url": "http://identifiers.org/ncbigene/259292",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "taste receptor, type 2, member 46"
            },
            "metanode": "Gene"
        },
        {
            "id": 29636,
            "identifier": "GO:0032914",
            "identifier_type": "str",
            "name": "positive regulation of transforming growth factor beta1 production",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032914",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 29637,
            "identifier": "PC7_6883",
            "identifier_type": "str",
            "name": "Regulation of HSF1-mediated heat shock response",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 29638,
            "identifier": "342667",
            "identifier_type": "int",
            "name": "STAC2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/342667",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "SH3 and cysteine rich domain 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 29639,
            "identifier": "GO:1903352",
            "identifier_type": "str",
            "name": "L-ornithine transmembrane transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903352",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 29640,
            "identifier": "5880",
            "identifier_type": "int",
            "name": "RAC2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5880",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)"
            },
            "metanode": "Gene"
        },
        {
            "id": 29641,
            "identifier": "10291",
            "identifier_type": "int",
            "name": "SF3A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10291",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "splicing factor 3a, subunit 1, 120kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 29642,
            "identifier": "PC7_8360",
            "identifier_type": "str",
            "name": "Transport of vitamins, nucleosides, and related molecules",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        }
    ]
}