Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=30625

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=30650",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=30600",
    "results": [
        {
            "id": 30618,
            "identifier": "PC7_6664",
            "identifier_type": "str",
            "name": "Pyrimidine salvage reactions",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 30619,
            "identifier": "GO:0014032",
            "identifier_type": "str",
            "name": "neural crest cell development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0014032",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 30620,
            "identifier": "GO:0019908",
            "identifier_type": "str",
            "name": "nuclear cyclin-dependent protein kinase holoenzyme complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019908",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 30621,
            "identifier": "4482",
            "identifier_type": "int",
            "name": "MSRA",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4482",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "methionine sulfoxide reductase A"
            },
            "metanode": "Gene"
        },
        {
            "id": 30622,
            "identifier": "PC7_7492",
            "identifier_type": "str",
            "name": "Signaling events mediated by PRL",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 30623,
            "identifier": "GO:0002024",
            "identifier_type": "str",
            "name": "diet induced thermogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002024",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 30624,
            "identifier": "GO:0004738",
            "identifier_type": "str",
            "name": "pyruvate dehydrogenase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004738",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 30625,
            "identifier": "C1262165",
            "identifier_type": "str",
            "name": "High turnover osteopathy",
            "properties": {
                "url": "http://identifiers.org/umls/C1262165",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 30626,
            "identifier": "DB00014",
            "identifier_type": "str",
            "name": "Goserelin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00014",
                "inchi": "InChI=1S/C59H84N18O14/c1-31(2)22-40(49(82)68-39(12-8-20-64-57(60)61)56(89)77-21-9-13-46(77)55(88)75-76-58(62)90)69-54(87)45(29-91-59(3,4)5)74-50(83)41(23-32-14-16-35(79)17-15-32)70-53(86)44(28-78)73-51(84)42(24-33-26-65-37-11-7-6-10-36(33)37)71-52(85)43(25-34-27-63-30-66-34)72-48(81)38-18-19-47(80)67-38/h6-7,10-11,14-17,26-27,30-31,38-46,65,78-79H,8-9,12-13,18-25,28-29H2,1-5H3,(H,63,66)(H,67,80)(H,68,82)(H,69,87)(H,70,86)(H,71,85)(H,72,81)(H,73,84)(H,74,83)(H,75,88)(H4,60,61,64)(H3,62,76,90)/t38-,39-,40-,41-,42-,43-,44-,45+,46-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=BLCLNMBMMGCOAS-URPVMXJPSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 30627,
            "identifier": "GO:0009306",
            "identifier_type": "str",
            "name": "protein secretion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009306",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 30628,
            "identifier": "GO:0036035",
            "identifier_type": "str",
            "name": "osteoclast development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0036035",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 30629,
            "identifier": "GO:0003755",
            "identifier_type": "str",
            "name": "peptidyl-prolyl cis-trans isomerase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003755",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 30630,
            "identifier": "25788",
            "identifier_type": "int",
            "name": "RAD54B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/25788",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "RAD54 homolog B (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 30631,
            "identifier": "1783",
            "identifier_type": "int",
            "name": "DYNC1LI2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1783",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "dynein, cytoplasmic 1, light intermediate chain 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 30632,
            "identifier": "55330",
            "identifier_type": "int",
            "name": "BLOC1S4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55330",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino"
            },
            "metanode": "Gene"
        },
        {
            "id": 30633,
            "identifier": "64093",
            "identifier_type": "int",
            "name": "SMOC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64093",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "SPARC related modular calcium binding 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 30634,
            "identifier": "168002",
            "identifier_type": "int",
            "name": "DACT2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/168002",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "dishevelled-binding antagonist of beta-catenin 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 30635,
            "identifier": "GO:0005685",
            "identifier_type": "str",
            "name": "U1 snRNP",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005685",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 30636,
            "identifier": "12",
            "identifier_type": "int",
            "name": "SERPINA3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/12",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 30637,
            "identifier": "8775",
            "identifier_type": "int",
            "name": "NAPA",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8775",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "N-ethylmaleimide-sensitive factor attachment protein, alpha"
            },
            "metanode": "Gene"
        },
        {
            "id": 30638,
            "identifier": "253935",
            "identifier_type": "int",
            "name": "ANGPTL5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/253935",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "angiopoietin-like 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 30639,
            "identifier": "GO:0042823",
            "identifier_type": "str",
            "name": "pyridoxal phosphate biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042823",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 30640,
            "identifier": "11228",
            "identifier_type": "int",
            "name": "RASSF8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11228",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "Ras association (RalGDS/AF-6) domain family (N-terminal) member 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 30641,
            "identifier": "GO:0047750",
            "identifier_type": "str",
            "name": "cholestenol delta-isomerase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0047750",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 30642,
            "identifier": "PC7_11020",
            "identifier_type": "str",
            "name": "betaKlotho-mediated ligand binding",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        }
    ]
}