Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=31775

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=31800",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=31750",
    "results": [
        {
            "id": 31769,
            "identifier": "79892",
            "identifier_type": "int",
            "name": "MCMBP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79892",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "minichromosome maintenance complex binding protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 31770,
            "identifier": "101060256",
            "identifier_type": "int",
            "name": "LOC101060256",
            "properties": {
                "url": "http://identifiers.org/ncbigene/101060256",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "tripartite motif-containing protein 51-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 31771,
            "identifier": "PC7_6799",
            "identifier_type": "str",
            "name": "RNA Polymerase II Pre-transcription Events",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 31772,
            "identifier": "5121",
            "identifier_type": "int",
            "name": "PCP4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5121",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "Purkinje cell protein 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 31773,
            "identifier": "55287",
            "identifier_type": "int",
            "name": "TMEM40",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55287",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "transmembrane protein 40"
            },
            "metanode": "Gene"
        },
        {
            "id": 31774,
            "identifier": "C0863084",
            "identifier_type": "str",
            "name": "Skin discomfort",
            "properties": {
                "url": "http://identifiers.org/umls/C0863084",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 31775,
            "identifier": "GO:0032730",
            "identifier_type": "str",
            "name": "positive regulation of interleukin-1 alpha production",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032730",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 31776,
            "identifier": "GO:0003186",
            "identifier_type": "str",
            "name": "tricuspid valve morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003186",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 31777,
            "identifier": "147409",
            "identifier_type": "int",
            "name": "DSG4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/147409",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "desmoglein 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 31778,
            "identifier": "GO:0048739",
            "identifier_type": "str",
            "name": "cardiac muscle fiber development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048739",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 31779,
            "identifier": "GO:0030346",
            "identifier_type": "str",
            "name": "protein phosphatase 2B binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030346",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 31780,
            "identifier": "GO:0070734",
            "identifier_type": "str",
            "name": "histone H3-K27 methylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070734",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 31781,
            "identifier": "GO:0015936",
            "identifier_type": "str",
            "name": "coenzyme A metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0015936",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 31782,
            "identifier": "55969",
            "identifier_type": "int",
            "name": "C20orf24",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55969",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "chromosome 20 open reading frame 24"
            },
            "metanode": "Gene"
        },
        {
            "id": 31783,
            "identifier": "101929469",
            "identifier_type": "int",
            "name": "LOC101929469",
            "properties": {
                "url": "http://identifiers.org/ncbigene/101929469",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "uncharacterized protein ENSP00000372125"
            },
            "metanode": "Gene"
        },
        {
            "id": 31784,
            "identifier": "DB00693",
            "identifier_type": "str",
            "name": "Fluorescein",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00693",
                "inchi": "InChI=1S/C20H12O5/c21-11-5-7-15-17(9-11)24-18-10-12(22)6-8-16(18)20(15)14-4-2-1-3-13(14)19(23)25-20/h1-10,21-22H",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=GNBHRKFJIUUOQI-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 31785,
            "identifier": "651",
            "identifier_type": "int",
            "name": "BMP3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/651",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "bone morphogenetic protein 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 31786,
            "identifier": "9414",
            "identifier_type": "int",
            "name": "TJP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9414",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "tight junction protein 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 31787,
            "identifier": "50801",
            "identifier_type": "int",
            "name": "KCNK4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/50801",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "potassium channel, two pore domain subfamily K, member 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 31788,
            "identifier": "GO:0008238",
            "identifier_type": "str",
            "name": "exopeptidase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008238",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 31789,
            "identifier": "DB00381",
            "identifier_type": "str",
            "name": "Amlodipine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00381",
                "inchi": "InChI=1S/C20H25ClN2O5/c1-4-28-20(25)18-15(11-27-10-9-22)23-12(2)16(19(24)26-3)17(18)13-7-5-6-8-14(13)21/h5-8,17,23H,4,9-11,22H2,1-3H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HTIQEAQVCYTUBX-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 31790,
            "identifier": "3104",
            "identifier_type": "int",
            "name": "ZBTB48",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3104",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "zinc finger and BTB domain containing 48"
            },
            "metanode": "Gene"
        },
        {
            "id": 31791,
            "identifier": "PC7_8798",
            "identifier_type": "str",
            "name": "YAP1- and WWTR1 (TAZ)-stimulated gene expression",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 31792,
            "identifier": "646019",
            "identifier_type": "int",
            "name": "CBY3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/646019",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "chibby homolog 3 (Drosophila)"
            },
            "metanode": "Gene"
        },
        {
            "id": 31793,
            "identifier": "3958",
            "identifier_type": "int",
            "name": "LGALS3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3958",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "lectin, galactoside-binding, soluble, 3"
            },
            "metanode": "Gene"
        }
    ]
}