Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=325

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=350",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=300",
    "results": [
        {
            "id": 325,
            "identifier": "GO:0006335",
            "identifier_type": "str",
            "name": "DNA replication-dependent nucleosome assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006335",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 326,
            "identifier": "GO:0006635",
            "identifier_type": "str",
            "name": "fatty acid beta-oxidation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006635",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 327,
            "identifier": "84105",
            "identifier_type": "int",
            "name": "PCBD2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84105",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 328,
            "identifier": "GO:0031959",
            "identifier_type": "str",
            "name": "mineralocorticoid receptor signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031959",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 329,
            "identifier": "149041",
            "identifier_type": "int",
            "name": "RC3H1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/149041",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "ring finger and CCCH-type domains 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 330,
            "identifier": "6252",
            "identifier_type": "int",
            "name": "RTN1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6252",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "reticulon 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 331,
            "identifier": "64781",
            "identifier_type": "int",
            "name": "CERK",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64781",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "ceramide kinase"
            },
            "metanode": "Gene"
        },
        {
            "id": 332,
            "identifier": "GO:0070585",
            "identifier_type": "str",
            "name": "protein localization to mitochondrion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070585",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 333,
            "identifier": "79823",
            "identifier_type": "int",
            "name": "CAMKMT",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79823",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "calmodulin-lysine N-methyltransferase"
            },
            "metanode": "Gene"
        },
        {
            "id": 334,
            "identifier": "100526773",
            "identifier_type": "int",
            "name": "EPPIN-WFDC6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100526773",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "EPPIN-WFDC6 readthrough"
            },
            "metanode": "Gene"
        },
        {
            "id": 335,
            "identifier": "828",
            "identifier_type": "int",
            "name": "CAPS",
            "properties": {
                "url": "http://identifiers.org/ncbigene/828",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "calcyphosine"
            },
            "metanode": "Gene"
        },
        {
            "id": 336,
            "identifier": "GO:0033233",
            "identifier_type": "str",
            "name": "regulation of protein sumoylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033233",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 337,
            "identifier": "24",
            "identifier_type": "int",
            "name": "ABCA4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/24",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "ATP-binding cassette, sub-family A (ABC1), member 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 338,
            "identifier": "27430",
            "identifier_type": "int",
            "name": "MAT2B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/27430",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "methionine adenosyltransferase II, beta"
            },
            "metanode": "Gene"
        },
        {
            "id": 339,
            "identifier": "UBERON:0001768",
            "identifier_type": "str",
            "name": "uvea",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0001768",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D014602"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 340,
            "identifier": "DB00666",
            "identifier_type": "str",
            "name": "Nafarelin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00666",
                "inchi": "InChI=1S/C66H83N17O13/c1-36(2)25-48(58(89)76-47(13-7-23-71-66(68)69)65(96)83-24-8-14-54(83)64(95)73-33-55(67)86)77-60(91)50(28-38-15-18-39-9-3-4-10-40(39)26-38)78-59(90)49(27-37-16-19-43(85)20-17-37)79-63(94)53(34-84)82-61(92)51(29-41-31-72-45-12-6-5-11-44(41)45)80-62(93)52(30-42-32-70-35-74-42)81-57(88)46-21-22-56(87)75-46/h3-6,9-12,15-20,26,31-32,35-36,46-54,72,84-85H,7-8,13-14,21-25,27-30,33-34H2,1-2H3,(H2,67,86)(H,70,74)(H,73,95)(H,75,87)(H,76,89)(H,77,91)(H,78,90)(H,79,94)(H,80,93)(H,81,88)(H,82,92)(H4,68,69,71)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=RWHUEXWOYVBUCI-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 341,
            "identifier": "GO:0005126",
            "identifier_type": "str",
            "name": "cytokine receptor binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005126",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 342,
            "identifier": "C0011630",
            "identifier_type": "str",
            "name": "Fungal skin infection",
            "properties": {
                "url": "http://identifiers.org/umls/C0011630",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 343,
            "identifier": "29883",
            "identifier_type": "int",
            "name": "CNOT7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/29883",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "CCR4-NOT transcription complex, subunit 7"
            },
            "metanode": "Gene"
        },
        {
            "id": 344,
            "identifier": "5878",
            "identifier_type": "int",
            "name": "RAB5C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5878",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "RAB5C, member RAS oncogene family"
            },
            "metanode": "Gene"
        },
        {
            "id": 345,
            "identifier": "10273",
            "identifier_type": "int",
            "name": "STUB1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10273",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase"
            },
            "metanode": "Gene"
        },
        {
            "id": 346,
            "identifier": "51804",
            "identifier_type": "int",
            "name": "SIX4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51804",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "SIX homeobox 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 347,
            "identifier": "GO:0032133",
            "identifier_type": "str",
            "name": "chromosome passenger complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032133",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 348,
            "identifier": "C0151610",
            "identifier_type": "str",
            "name": "Tongue oedema",
            "properties": {
                "url": "http://identifiers.org/umls/C0151610",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 349,
            "identifier": "C0085616",
            "identifier_type": "str",
            "name": "Vasospasm",
            "properties": {
                "url": "http://identifiers.org/umls/C0085616",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        }
    ]
}