Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=32725

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=32750",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=32700",
    "results": [
        {
            "id": 32718,
            "identifier": "PC7_6890",
            "identifier_type": "str",
            "name": "Regulation of PLK1 Activity at G2/M Transition",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 32719,
            "identifier": "587",
            "identifier_type": "int",
            "name": "BCAT2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/587",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "branched chain amino-acid transaminase 2, mitochondrial"
            },
            "metanode": "Gene"
        },
        {
            "id": 32720,
            "identifier": "GO:0010745",
            "identifier_type": "str",
            "name": "negative regulation of macrophage derived foam cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010745",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 32721,
            "identifier": "GO:0001881",
            "identifier_type": "str",
            "name": "receptor recycling",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001881",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 32722,
            "identifier": "1891",
            "identifier_type": "int",
            "name": "ECH1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1891",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "enoyl CoA hydratase 1, peroxisomal"
            },
            "metanode": "Gene"
        },
        {
            "id": 32723,
            "identifier": "GO:0006537",
            "identifier_type": "str",
            "name": "glutamate biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006537",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 32724,
            "identifier": "GO:0019637",
            "identifier_type": "str",
            "name": "organophosphate metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019637",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 32725,
            "identifier": "C0162285",
            "identifier_type": "str",
            "name": "Eyelid oedema",
            "properties": {
                "url": "http://identifiers.org/umls/C0162285",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 32726,
            "identifier": "78987",
            "identifier_type": "int",
            "name": "CRELD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/78987",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "cysteine-rich with EGF-like domains 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 32727,
            "identifier": "DB01190",
            "identifier_type": "str",
            "name": "Clindamycin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01190",
                "inchi": "InChI=1S/C18H33ClN2O5S/c1-5-6-10-7-11(21(3)8-10)17(25)20-12(9(2)19)16-14(23)13(22)15(24)18(26-16)27-4/h9-16,18,22-24H,5-8H2,1-4H3,(H,20,25)/t9?,10-,11+,12?,13+,14-,15-,16-,18-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=KDLRVYVGXIQJDK-NOWPCOIGSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 32728,
            "identifier": "DB00616",
            "identifier_type": "str",
            "name": "Candoxatril",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00616",
                "inchi": "InChI=1S/C29H41NO7/c1-35-15-16-36-19-23(27(33)37-25-12-9-20-5-4-6-22(20)17-25)18-29(13-2-3-14-29)28(34)30-24-10-7-21(8-11-24)26(31)32/h9,12,17,21,23-24H,2-8,10-11,13-16,18-19H2,1H3,(H,30,34)(H,31,32)/t21-,23-,24+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ZTWZVMIYIIVABD-OEMFJLHTSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 32729,
            "identifier": "GO:0010712",
            "identifier_type": "str",
            "name": "regulation of collagen metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010712",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 32730,
            "identifier": "248",
            "identifier_type": "int",
            "name": "ALPI",
            "properties": {
                "url": "http://identifiers.org/ncbigene/248",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "alkaline phosphatase, intestinal"
            },
            "metanode": "Gene"
        },
        {
            "id": 32731,
            "identifier": "GO:0006577",
            "identifier_type": "str",
            "name": "amino-acid betaine metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006577",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 32732,
            "identifier": "157922",
            "identifier_type": "int",
            "name": "CAMSAP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/157922",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "calmodulin regulated spectrin-associated protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 32733,
            "identifier": "2589",
            "identifier_type": "int",
            "name": "GALNT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2589",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "polypeptide N-acetylgalactosaminyltransferase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 32734,
            "identifier": "404552",
            "identifier_type": "int",
            "name": "SCGB1D4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/404552",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "secretoglobin, family 1D, member 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 32735,
            "identifier": "PC7_6852",
            "identifier_type": "str",
            "name": "Ras activation uopn Ca2+ infux through NMDA receptor",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 32736,
            "identifier": "GO:0002634",
            "identifier_type": "str",
            "name": "regulation of germinal center formation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002634",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 32737,
            "identifier": "GO:0098552",
            "identifier_type": "str",
            "name": "side of membrane",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0098552",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 32738,
            "identifier": "5042",
            "identifier_type": "int",
            "name": "PABPC3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5042",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "poly(A) binding protein, cytoplasmic 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 32739,
            "identifier": "55064",
            "identifier_type": "int",
            "name": "SPATA6L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55064",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "spermatogenesis associated 6-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 32740,
            "identifier": "GO:0004677",
            "identifier_type": "str",
            "name": "DNA-dependent protein kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004677",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 32741,
            "identifier": "102723503",
            "identifier_type": "int",
            "name": "LOC102723503",
            "properties": {
                "url": "http://identifiers.org/ncbigene/102723503",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "uncharacterized LOC102723503"
            },
            "metanode": "Gene"
        },
        {
            "id": 32742,
            "identifier": "GO:0030948",
            "identifier_type": "str",
            "name": "negative regulation of vascular endothelial growth factor receptor signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030948",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}