Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=34975

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=35000",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=34950",
    "results": [
        {
            "id": 34971,
            "identifier": "2091",
            "identifier_type": "int",
            "name": "FBL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2091",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "fibrillarin"
            },
            "metanode": "Gene"
        },
        {
            "id": 34972,
            "identifier": "445329",
            "identifier_type": "int",
            "name": "SULT1A4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/445329",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 34973,
            "identifier": "C0919691",
            "identifier_type": "str",
            "name": "Anastomotic leak",
            "properties": {
                "url": "http://identifiers.org/umls/C0919691",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 34974,
            "identifier": "C0031345",
            "identifier_type": "str",
            "name": "Pharyngeal disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C0031345",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 34975,
            "identifier": "PC7_8773",
            "identifier_type": "str",
            "name": "WNT mediated activation of DVL",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 34976,
            "identifier": "GO:0022400",
            "identifier_type": "str",
            "name": "regulation of rhodopsin mediated signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0022400",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 34977,
            "identifier": "DB00334",
            "identifier_type": "str",
            "name": "Olanzapine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00334",
                "inchi": "InChI=1S/C17H20N4S/c1-12-11-13-16(21-9-7-20(2)8-10-21)18-14-5-3-4-6-15(14)19-17(13)22-12/h3-6,11,19H,7-10H2,1-2H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=KVWDHTXUZHCGIO-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 34978,
            "identifier": "7141",
            "identifier_type": "int",
            "name": "TNP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7141",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "transition protein 1 (during histone to protamine replacement)"
            },
            "metanode": "Gene"
        },
        {
            "id": 34979,
            "identifier": "105369186",
            "identifier_type": "int",
            "name": "LOC105369186",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105369186",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "beta-glucuronidase-like protein SMA4"
            },
            "metanode": "Gene"
        },
        {
            "id": 34980,
            "identifier": "DB06691",
            "identifier_type": "str",
            "name": "Mepyramine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB06691",
                "inchi": "InChI=1S/C17H23N3O/c1-19(2)12-13-20(17-6-4-5-11-18-17)14-15-7-9-16(21-3)10-8-15/h4-11H,12-14H2,1-3H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=YECBIJXISLIIDS-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 34981,
            "identifier": "25978",
            "identifier_type": "int",
            "name": "CHMP2B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/25978",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "charged multivesicular body protein 2B"
            },
            "metanode": "Gene"
        },
        {
            "id": 34982,
            "identifier": "132789",
            "identifier_type": "int",
            "name": "GNPDA2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/132789",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "glucosamine-6-phosphate deaminase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 34983,
            "identifier": "55520",
            "identifier_type": "int",
            "name": "ELAC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55520",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "elaC ribonuclease Z 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 34984,
            "identifier": "220988",
            "identifier_type": "int",
            "name": "HNRNPA3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/220988",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "heterogeneous nuclear ribonucleoprotein A3"
            },
            "metanode": "Gene"
        },
        {
            "id": 34985,
            "identifier": "124995",
            "identifier_type": "int",
            "name": "MRPL10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/124995",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "mitochondrial ribosomal protein L10"
            },
            "metanode": "Gene"
        },
        {
            "id": 34986,
            "identifier": "202",
            "identifier_type": "int",
            "name": "AIM1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/202",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "absent in melanoma 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 34987,
            "identifier": "PC7_1538",
            "identifier_type": "str",
            "name": "Activation of NIMA Kinases NEK9, NEK6, NEK7",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 34988,
            "identifier": "DB00745",
            "identifier_type": "str",
            "name": "Modafinil",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00745",
                "inchi": "InChI=1S/C15H15NO2S/c16-14(17)11-19(18)15(12-7-3-1-4-8-12)13-9-5-2-6-10-13/h1-10,15H,11H2,(H2,16,17)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=YFGHCGITMMYXAQ-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 34989,
            "identifier": "PC7_5873",
            "identifier_type": "str",
            "name": "Nef mediated downregulation of MHC class I complex cell surface expression",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 34990,
            "identifier": "219473",
            "identifier_type": "int",
            "name": "OR8K3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/219473",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "olfactory receptor, family 8, subfamily K, member 3 (gene/pseudogene)"
            },
            "metanode": "Gene"
        },
        {
            "id": 34991,
            "identifier": "D000855",
            "identifier_type": "str",
            "name": "Anorexia",
            "properties": {
                "url": "http://identifiers.org/mesh/D000855",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 34992,
            "identifier": "100130733",
            "identifier_type": "int",
            "name": "LRRC70",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100130733",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "leucine rich repeat containing 70"
            },
            "metanode": "Gene"
        },
        {
            "id": 34993,
            "identifier": "GO:0003192",
            "identifier_type": "str",
            "name": "mitral valve formation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003192",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 34994,
            "identifier": "C0003126",
            "identifier_type": "str",
            "name": "Anosmia",
            "properties": {
                "url": "http://identifiers.org/umls/C0003126",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 34995,
            "identifier": "UBERON:0002223",
            "identifier_type": "str",
            "name": "endolymphatic sac",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0002223",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D004712"
            },
            "metanode": "Anatomy"
        }
    ]
}