Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=35500

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=35525",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=35475",
    "results": [
        {
            "id": 35496,
            "identifier": "3671",
            "identifier_type": "int",
            "name": "ISLR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3671",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "immunoglobulin superfamily containing leucine-rich repeat"
            },
            "metanode": "Gene"
        },
        {
            "id": 35497,
            "identifier": "80895",
            "identifier_type": "int",
            "name": "ILKAP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80895",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "integrin-linked kinase-associated serine/threonine phosphatase"
            },
            "metanode": "Gene"
        },
        {
            "id": 35498,
            "identifier": "GO:0030061",
            "identifier_type": "str",
            "name": "mitochondrial crista",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030061",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 35499,
            "identifier": "84666",
            "identifier_type": "int",
            "name": "RETNLB",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84666",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "resistin like beta"
            },
            "metanode": "Gene"
        },
        {
            "id": 35500,
            "identifier": "6124",
            "identifier_type": "int",
            "name": "RPL4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6124",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "ribosomal protein L4"
            },
            "metanode": "Gene"
        },
        {
            "id": 35501,
            "identifier": "10535",
            "identifier_type": "int",
            "name": "RNASEH2A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10535",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "ribonuclease H2, subunit A"
            },
            "metanode": "Gene"
        },
        {
            "id": 35502,
            "identifier": "D003693",
            "identifier_type": "str",
            "name": "Delirium",
            "properties": {
                "url": "http://identifiers.org/mesh/D003693",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 35503,
            "identifier": "GO:0008970",
            "identifier_type": "str",
            "name": "phosphatidylcholine 1-acylhydrolase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008970",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 35504,
            "identifier": "GO:0022839",
            "identifier_type": "str",
            "name": "ion gated channel activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0022839",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 35505,
            "identifier": "GO:2000870",
            "identifier_type": "str",
            "name": "regulation of progesterone secretion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000870",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 35506,
            "identifier": "DB00581",
            "identifier_type": "str",
            "name": "Lactulose",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00581",
                "inchi": "InChI=1S/C12H22O11/c13-1-4-6(16)7(17)8(18)11(21-4)22-9-5(2-14)23-12(20,3-15)10(9)19/h4-11,13-20H,1-3H2/t4-,5-,6+,7+,8-,9-,10+,11+,12-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JCQLYHFGKNRPGE-FCVZTGTOSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 35507,
            "identifier": "4353",
            "identifier_type": "int",
            "name": "MPO",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4353",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "myeloperoxidase"
            },
            "metanode": "Gene"
        },
        {
            "id": 35508,
            "identifier": "GO:0070234",
            "identifier_type": "str",
            "name": "positive regulation of T cell apoptotic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070234",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 35509,
            "identifier": "DB00885",
            "identifier_type": "str",
            "name": "Pemirolast",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00885",
                "inchi": "InChI=1S/C10H8N6O/c1-6-3-2-4-16-9(6)11-5-7(10(16)17)8-12-14-15-13-8/h2-5H,1H3,(H,12,13,14,15)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HIANJWSAHKJQTH-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 35510,
            "identifier": "6822",
            "identifier_type": "int",
            "name": "SULT2A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6822",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 35511,
            "identifier": "DB00585",
            "identifier_type": "str",
            "name": "Nizatidine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00585",
                "inchi": "InChI=1S/C12H21N5O2S2/c1-13-11(6-17(18)19)14-4-5-20-8-10-9-21-12(15-10)7-16(2)3/h6,9,13-14H,4-5,7-8H2,1-3H3/b11-6+",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=SGXXNSQHWDMGGP-IZZDOVSWSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 35512,
            "identifier": "388591",
            "identifier_type": "int",
            "name": "RNF207",
            "properties": {
                "url": "http://identifiers.org/ncbigene/388591",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "ring finger protein 207"
            },
            "metanode": "Gene"
        },
        {
            "id": 35513,
            "identifier": "GO:0045760",
            "identifier_type": "str",
            "name": "positive regulation of action potential",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045760",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 35514,
            "identifier": "1654",
            "identifier_type": "int",
            "name": "DDX3X",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1654",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked"
            },
            "metanode": "Gene"
        },
        {
            "id": 35515,
            "identifier": "PC7_8666",
            "identifier_type": "str",
            "name": "VEGFR2 mediated cell proliferation",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 35516,
            "identifier": "PC7_2521",
            "identifier_type": "str",
            "name": "Cell Cycle, Mitotic",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 35517,
            "identifier": "GO:1903318",
            "identifier_type": "str",
            "name": "negative regulation of protein maturation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903318",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 35555,
            "identifier": "54522",
            "identifier_type": "int",
            "name": "ANKRD16",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54522",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "ankyrin repeat domain 16"
            },
            "metanode": "Gene"
        },
        {
            "id": 35518,
            "identifier": "DB01407",
            "identifier_type": "str",
            "name": "Clenbuterol",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01407",
                "inchi": "InChI=1S/C12H18Cl2N2O/c1-12(2,3)16-6-10(17)7-4-8(13)11(15)9(14)5-7/h4-5,10,16-17H,6,15H2,1-3H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=STJMRWALKKWQGH-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 35519,
            "identifier": "390916",
            "identifier_type": "int",
            "name": "NUDT19",
            "properties": {
                "url": "http://identifiers.org/ncbigene/390916",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "nudix (nucleoside diphosphate linked moiety X)-type motif 19"
            },
            "metanode": "Gene"
        }
    ]
}