Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=35900

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=35925",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=35875",
    "results": [
        {
            "id": 35895,
            "identifier": "102724183",
            "identifier_type": "int",
            "name": "LOC102724183",
            "properties": {
                "url": "http://identifiers.org/ncbigene/102724183",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "uncharacterized LOC102724183"
            },
            "metanode": "Gene"
        },
        {
            "id": 35896,
            "identifier": "C0553731",
            "identifier_type": "str",
            "name": "PRL increased",
            "properties": {
                "url": "http://identifiers.org/umls/C0553731",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 35897,
            "identifier": "GO:0051297",
            "identifier_type": "str",
            "name": "centrosome organization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051297",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 35898,
            "identifier": "9061",
            "identifier_type": "int",
            "name": "PAPSS1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9061",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "3'-phosphoadenosine 5'-phosphosulfate synthase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 35899,
            "identifier": "DB01000",
            "identifier_type": "str",
            "name": "Cyclacillin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01000",
                "inchi": "InChI=1S/C15H23N3O4S/c1-14(2)9(12(20)21)18-10(19)8(11(18)23-14)17-13(22)15(16)6-4-3-5-7-15/h8-9,11H,3-7,16H2,1-2H3,(H,17,22)(H,20,21)/t8-,9+,11-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HGBLNBBNRORJKI-WCABBAIRSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 35900,
            "identifier": "DB01282",
            "identifier_type": "str",
            "name": "Carbetocin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01282",
                "inchi": "InChI=1S/C45H69N11O12S/c1-6-25(4)38-44(66)51-28(15-16-34(46)57)40(62)52-31(21-35(47)58)41(63)54-32(23-69-18-8-10-37(60)50-30(42(64)55-38)20-26-11-13-27(68-5)14-12-26)45(67)56-17-7-9-33(56)43(65)53-29(19-24(2)3)39(61)49-22-36(48)59/h11-14,24-25,28-33,38H,6-10,15-23H2,1-5H3,(H2,46,57)(H2,47,58)(H2,48,59)(H,49,61)(H,50,60)(H,51,66)(H,52,62)(H,53,65)(H,54,63)(H,55,64)/t25-,28-,29-,30-,31-,32-,33-,38-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=NSTRIRCPWQHTIA-DTRKZRJBSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 35901,
            "identifier": "136332",
            "identifier_type": "int",
            "name": "LRGUK",
            "properties": {
                "url": "http://identifiers.org/ncbigene/136332",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "leucine-rich repeats and guanylate kinase domain containing"
            },
            "metanode": "Gene"
        },
        {
            "id": 35902,
            "identifier": "GO:0044262",
            "identifier_type": "str",
            "name": "cellular carbohydrate metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044262",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 35903,
            "identifier": "23285",
            "identifier_type": "int",
            "name": "KIAA1107",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23285",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "KIAA1107"
            },
            "metanode": "Gene"
        },
        {
            "id": 35904,
            "identifier": "GO:0052654",
            "identifier_type": "str",
            "name": "L-leucine transaminase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0052654",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 35905,
            "identifier": "2895",
            "identifier_type": "int",
            "name": "GRID2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2895",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "glutamate receptor, ionotropic, delta 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 35906,
            "identifier": "GO:0061635",
            "identifier_type": "str",
            "name": "regulation of protein complex stability",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0061635",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 35907,
            "identifier": "C0221161",
            "identifier_type": "str",
            "name": "Shallow breathing",
            "properties": {
                "url": "http://identifiers.org/umls/C0221161",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 35908,
            "identifier": "51314",
            "identifier_type": "int",
            "name": "NME8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51314",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "NME/NM23 family member 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 35909,
            "identifier": "80119",
            "identifier_type": "int",
            "name": "PIF1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80119",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "PIF1 5'-to-3' DNA helicase"
            },
            "metanode": "Gene"
        },
        {
            "id": 35910,
            "identifier": "GO:0072559",
            "identifier_type": "str",
            "name": "NLRP3 inflammasome complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072559",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 35911,
            "identifier": "654429",
            "identifier_type": "int",
            "name": "LRTM2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/654429",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "leucine-rich repeats and transmembrane domains 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 35912,
            "identifier": "PC7_4161",
            "identifier_type": "str",
            "name": "Glucocorticoid receptor regulatory network",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 35913,
            "identifier": "5348",
            "identifier_type": "int",
            "name": "FXYD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5348",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "FXYD domain containing ion transport regulator 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 35914,
            "identifier": "51274",
            "identifier_type": "int",
            "name": "KLF3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51274",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "Kruppel-like factor 3 (basic)"
            },
            "metanode": "Gene"
        },
        {
            "id": 35915,
            "identifier": "GO:0052547",
            "identifier_type": "str",
            "name": "regulation of peptidase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0052547",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 35916,
            "identifier": "221393",
            "identifier_type": "int",
            "name": "ADGRF4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/221393",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "adhesion G protein-coupled receptor F4"
            },
            "metanode": "Gene"
        },
        {
            "id": 35917,
            "identifier": "730183",
            "identifier_type": "int",
            "name": "LOC730183",
            "properties": {
                "url": "http://identifiers.org/ncbigene/730183",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "uncharacterized LOC730183"
            },
            "metanode": "Gene"
        },
        {
            "id": 35918,
            "identifier": "GO:0030810",
            "identifier_type": "str",
            "name": "positive regulation of nucleotide biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030810",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 35919,
            "identifier": "GO:0009922",
            "identifier_type": "str",
            "name": "fatty acid elongase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009922",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}