Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=36125

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=36150",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=36100",
    "results": [
        {
            "id": 36121,
            "identifier": "GO:0018214",
            "identifier_type": "str",
            "name": "protein carboxylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0018214",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36122,
            "identifier": "GO:0050689",
            "identifier_type": "str",
            "name": "negative regulation of defense response to virus by host",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050689",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36123,
            "identifier": "GO:0051430",
            "identifier_type": "str",
            "name": "corticotropin-releasing hormone receptor 1 binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051430",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 36124,
            "identifier": "GO:0032781",
            "identifier_type": "str",
            "name": "positive regulation of ATPase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032781",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36125,
            "identifier": "23145",
            "identifier_type": "int",
            "name": "SSPO",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23145",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "SCO-spondin"
            },
            "metanode": "Gene"
        },
        {
            "id": 36126,
            "identifier": "GO:0072379",
            "identifier_type": "str",
            "name": "ER membrane insertion complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072379",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 36127,
            "identifier": "400863",
            "identifier_type": "int",
            "name": "LINC00649",
            "properties": {
                "url": "http://identifiers.org/ncbigene/400863",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "long intergenic non-protein coding RNA 649"
            },
            "metanode": "Gene"
        },
        {
            "id": 36128,
            "identifier": "C0263449",
            "identifier_type": "str",
            "name": "Dermatitis perioral",
            "properties": {
                "url": "http://identifiers.org/umls/C0263449",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 36129,
            "identifier": "DB00707",
            "identifier_type": "str",
            "name": "Porfimer",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00707",
                "inchi": "InChI=1S/C99H110N12O13/c1-43-46(4)70-37-88-97(55(13)79(109-88)34-76-51(9)63(21-27-93(116)117)84(106-76)40-82-61(19-25-91(112)113)49(7)73(103-82)31-67(43)100-70)58(16)123-59(17)98-56(14)80-35-77-53(11)65(23-29-95(120)121)86(108-77)42-87-66(54(12)75(105-87)33-69-44(2)47(5)71(101-69)38-89(98)110-80)24-30-96(122)124-60(18)99-57(15)81-36-78-52(10)64(22-28-94(118)119)85(107-78)41-83-62(20-26-92(114)115)50(8)74(104-83)32-68-45(3)48(6)72(102-68)39-90(99)111-81/h31-36,40-42,58-60,70-72,103-105,109-111H,19-30,37-39H2,1-18H3,(H,112,113)(H,114,115)(H,116,117)(H,118,119)(H,120,121)/b73-31-,74-32-,75-33-,76-34-,77-35-,78-36-,82-40-,83-41-,87-42-",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=NYQGMKORVNYSLZ-DZGUDHBZSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 36130,
            "identifier": "WP707_r82937",
            "identifier_type": "str",
            "name": "DNA Damage Response",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP707_r82937",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 36131,
            "identifier": "339122",
            "identifier_type": "int",
            "name": "RAB43",
            "properties": {
                "url": "http://identifiers.org/ncbigene/339122",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "RAB43, member RAS oncogene family"
            },
            "metanode": "Gene"
        },
        {
            "id": 36132,
            "identifier": "5980",
            "identifier_type": "int",
            "name": "REV3L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5980",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "REV3-like, polymerase (DNA directed), zeta, catalytic subunit"
            },
            "metanode": "Gene"
        },
        {
            "id": 36133,
            "identifier": "GO:0097466",
            "identifier_type": "str",
            "name": "glycoprotein ERAD pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0097466",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36134,
            "identifier": "GO:0043649",
            "identifier_type": "str",
            "name": "dicarboxylic acid catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043649",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36135,
            "identifier": "79575",
            "identifier_type": "int",
            "name": "ABHD8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79575",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "abhydrolase domain containing 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 36136,
            "identifier": "GO:0018916",
            "identifier_type": "str",
            "name": "nitrobenzene metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0018916",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36137,
            "identifier": "708",
            "identifier_type": "int",
            "name": "C1QBP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/708",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "complement component 1, q subcomponent binding protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 36138,
            "identifier": "9343",
            "identifier_type": "int",
            "name": "EFTUD2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9343",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "elongation factor Tu GTP binding domain containing 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 36139,
            "identifier": "GO:0031093",
            "identifier_type": "str",
            "name": "platelet alpha granule lumen",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031093",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 36140,
            "identifier": "C0851807",
            "identifier_type": "str",
            "name": "Aspergillus infection",
            "properties": {
                "url": "http://identifiers.org/umls/C0851807",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 36141,
            "identifier": "3161",
            "identifier_type": "int",
            "name": "HMMR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3161",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "hyaluronan-mediated motility receptor (RHAMM)"
            },
            "metanode": "Gene"
        },
        {
            "id": 36142,
            "identifier": "57722",
            "identifier_type": "int",
            "name": "IGDCC4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57722",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "immunoglobulin superfamily, DCC subclass, member 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 36143,
            "identifier": "83483",
            "identifier_type": "int",
            "name": "PLVAP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/83483",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "plasmalemma vesicle associated protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 36144,
            "identifier": "GO:0034683",
            "identifier_type": "str",
            "name": "integrin alphav-beta3 complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034683",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 36145,
            "identifier": "GO:0008502",
            "identifier_type": "str",
            "name": "melatonin receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008502",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}