Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=36850

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=36875",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=36825",
    "results": [
        {
            "id": 36846,
            "identifier": "388799",
            "identifier_type": "int",
            "name": "FAM209B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/388799",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "family with sequence similarity 209, member B"
            },
            "metanode": "Gene"
        },
        {
            "id": 36847,
            "identifier": "1990",
            "identifier_type": "int",
            "name": "CELA1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1990",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "chymotrypsin-like elastase family, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 36848,
            "identifier": "55665",
            "identifier_type": "int",
            "name": "URGCP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55665",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "upregulator of cell proliferation"
            },
            "metanode": "Gene"
        },
        {
            "id": 36849,
            "identifier": "64172",
            "identifier_type": "int",
            "name": "OSGEPL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64172",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "O-sialoglycoprotein endopeptidase-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 36850,
            "identifier": "PC7_1596",
            "identifier_type": "str",
            "name": "Alpha-defensins",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 36851,
            "identifier": "GO:0042255",
            "identifier_type": "str",
            "name": "ribosome assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042255",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36852,
            "identifier": "GO:0006662",
            "identifier_type": "str",
            "name": "glycerol ether metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006662",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36853,
            "identifier": "GO:0004145",
            "identifier_type": "str",
            "name": "diamine N-acetyltransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004145",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 36854,
            "identifier": "GO:0017017",
            "identifier_type": "str",
            "name": "MAP kinase tyrosine/serine/threonine phosphatase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0017017",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 36855,
            "identifier": "347",
            "identifier_type": "int",
            "name": "APOD",
            "properties": {
                "url": "http://identifiers.org/ncbigene/347",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "apolipoprotein D"
            },
            "metanode": "Gene"
        },
        {
            "id": 36856,
            "identifier": "8854",
            "identifier_type": "int",
            "name": "ALDH1A2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8854",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "aldehyde dehydrogenase 1 family, member A2"
            },
            "metanode": "Gene"
        },
        {
            "id": 36857,
            "identifier": "GO:0002327",
            "identifier_type": "str",
            "name": "immature B cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002327",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36858,
            "identifier": "GO:1903799",
            "identifier_type": "str",
            "name": "negative regulation of production of miRNAs involved in gene silencing by miRNA",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903799",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36859,
            "identifier": "GO:0009109",
            "identifier_type": "str",
            "name": "coenzyme catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009109",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36860,
            "identifier": "728392",
            "identifier_type": "int",
            "name": "LOC728392",
            "properties": {
                "url": "http://identifiers.org/ncbigene/728392",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "uncharacterized LOC728392"
            },
            "metanode": "Gene"
        },
        {
            "id": 36861,
            "identifier": "C0085649",
            "identifier_type": "str",
            "name": "Oedema peripheral",
            "properties": {
                "url": "http://identifiers.org/umls/C0085649",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 36862,
            "identifier": "285736",
            "identifier_type": "int",
            "name": "FLJ35700",
            "properties": {
                "url": "http://identifiers.org/ncbigene/285736",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "uncharacterized protein FLJ35700"
            },
            "metanode": "Gene"
        },
        {
            "id": 36863,
            "identifier": "GO:0043524",
            "identifier_type": "str",
            "name": "negative regulation of neuron apoptotic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043524",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36864,
            "identifier": "2800",
            "identifier_type": "int",
            "name": "GOLGA1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2800",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "golgin A1"
            },
            "metanode": "Gene"
        },
        {
            "id": 36865,
            "identifier": "79896",
            "identifier_type": "int",
            "name": "THNSL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79896",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "threonine synthase-like 1 (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 36866,
            "identifier": "100129363",
            "identifier_type": "int",
            "name": "LOC100129363",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100129363",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "uncharacterized LOC100129363"
            },
            "metanode": "Gene"
        },
        {
            "id": 36867,
            "identifier": "DB00547",
            "identifier_type": "str",
            "name": "Desoximetasone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00547",
                "inchi": "InChI=1S/C22H29FO4/c1-12-8-16-15-5-4-13-9-14(25)6-7-21(13,3)22(15,23)18(27)10-20(16,2)19(12)17(26)11-24/h6-7,9,12,15-16,18-19,24,27H,4-5,8,10-11H2,1-3H3/t12-,15+,16+,18+,19-,20+,21+,22+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VWVSBHGCDBMOOT-IIEHVVJPSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 36868,
            "identifier": "114548",
            "identifier_type": "int",
            "name": "NLRP3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/114548",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "NLR family, pyrin domain containing 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 36869,
            "identifier": "5141",
            "identifier_type": "int",
            "name": "PDE4A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5141",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "phosphodiesterase 4A, cAMP-specific"
            },
            "metanode": "Gene"
        },
        {
            "id": 36870,
            "identifier": "55291",
            "identifier_type": "int",
            "name": "PPP6R3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55291",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "protein phosphatase 6, regulatory subunit 3"
            },
            "metanode": "Gene"
        }
    ]
}