Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=36925

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=36950",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=36900",
    "results": [
        {
            "id": 36921,
            "identifier": "646603",
            "identifier_type": "int",
            "name": "C4orf51",
            "properties": {
                "url": "http://identifiers.org/ncbigene/646603",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "chromosome 4 open reading frame 51"
            },
            "metanode": "Gene"
        },
        {
            "id": 36922,
            "identifier": "GO:0039528",
            "identifier_type": "str",
            "name": "cytoplasmic pattern recognition receptor signaling pathway in response to virus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0039528",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36923,
            "identifier": "10552",
            "identifier_type": "int",
            "name": "ARPC1A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10552",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "actin related protein 2/3 complex, subunit 1A, 41kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 36924,
            "identifier": "C0152192",
            "identifier_type": "str",
            "name": "Scotoma of blind spot area",
            "properties": {
                "url": "http://identifiers.org/umls/C0152192",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 36925,
            "identifier": "GO:0090197",
            "identifier_type": "str",
            "name": "positive regulation of chemokine secretion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090197",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36926,
            "identifier": "353274",
            "identifier_type": "int",
            "name": "ZNF445",
            "properties": {
                "url": "http://identifiers.org/ncbigene/353274",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "zinc finger protein 445"
            },
            "metanode": "Gene"
        },
        {
            "id": 36927,
            "identifier": "D006628",
            "identifier_type": "str",
            "name": "Hirsutism",
            "properties": {
                "url": "http://identifiers.org/mesh/D006628",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 36928,
            "identifier": "GO:0036296",
            "identifier_type": "str",
            "name": "response to increased oxygen levels",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0036296",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36929,
            "identifier": "GO:0016624",
            "identifier_type": "str",
            "name": "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016624",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 36930,
            "identifier": "135458",
            "identifier_type": "int",
            "name": "HUS1B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/135458",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "HUS1 checkpoint homolog b (S. pombe)"
            },
            "metanode": "Gene"
        },
        {
            "id": 36931,
            "identifier": "10948",
            "identifier_type": "int",
            "name": "STARD3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10948",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "StAR-related lipid transfer (START) domain containing 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 36932,
            "identifier": "PC7_1103",
            "identifier_type": "str",
            "name": "ALK1 pathway",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 36933,
            "identifier": "84964",
            "identifier_type": "int",
            "name": "ALKBH6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84964",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "alkB, alkylation repair homolog 6 (E. coli)"
            },
            "metanode": "Gene"
        },
        {
            "id": 36934,
            "identifier": "DB01211",
            "identifier_type": "str",
            "name": "Clarithromycin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01211",
                "inchi": "InChI=1S/C38H69NO13/c1-15-26-38(10,45)31(42)21(4)28(40)19(2)17-37(9,47-14)33(52-35-29(41)25(39(11)12)16-20(3)48-35)22(5)30(23(6)34(44)50-26)51-27-18-36(8,46-13)32(43)24(7)49-27/h19-27,29-33,35,41-43,45H,15-18H2,1-14H3/t19-,20-,21+,22+,23-,24+,25+,26-,27+,29-,30+,31-,32+,33-,35+,36-,37-,38-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=AGOYDEPGAOXOCK-KCBOHYOISA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 36935,
            "identifier": "DB00508",
            "identifier_type": "str",
            "name": "Triflupromazine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00508",
                "inchi": "InChI=1S/C18H19F3N2S/c1-22(2)10-5-11-23-14-6-3-4-7-16(14)24-17-9-8-13(12-15(17)23)18(19,20)21/h3-4,6-9,12H,5,10-11H2,1-2H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=XSCGXQMFQXDFCW-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 36936,
            "identifier": "GO:0021553",
            "identifier_type": "str",
            "name": "olfactory nerve development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021553",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36937,
            "identifier": "GO:0048858",
            "identifier_type": "str",
            "name": "cell projection morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048858",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36938,
            "identifier": "25820",
            "identifier_type": "int",
            "name": "ARIH1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/25820",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "ariadne RBR E3 ubiquitin protein ligase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 36939,
            "identifier": "1559",
            "identifier_type": "int",
            "name": "CYP2C9",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1559",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "cytochrome P450, family 2, subfamily C, polypeptide 9"
            },
            "metanode": "Gene"
        },
        {
            "id": 36940,
            "identifier": "55362",
            "identifier_type": "int",
            "name": "TMEM63B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55362",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "transmembrane protein 63B"
            },
            "metanode": "Gene"
        },
        {
            "id": 36941,
            "identifier": "GO:0032588",
            "identifier_type": "str",
            "name": "trans-Golgi network membrane",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032588",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 36942,
            "identifier": "GO:0032693",
            "identifier_type": "str",
            "name": "negative regulation of interleukin-10 production",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032693",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 36943,
            "identifier": "C0000768",
            "identifier_type": "str",
            "name": "Congenital anomaly",
            "properties": {
                "url": "http://identifiers.org/umls/C0000768",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 36944,
            "identifier": "C0152447",
            "identifier_type": "str",
            "name": "Urethral discharge",
            "properties": {
                "url": "http://identifiers.org/umls/C0152447",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 36945,
            "identifier": "GO:0072527",
            "identifier_type": "str",
            "name": "pyrimidine-containing compound metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072527",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}