Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=37100

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=37125",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=37075",
    "results": [
        {
            "id": 37096,
            "identifier": "629",
            "identifier_type": "int",
            "name": "CFB",
            "properties": {
                "url": "http://identifiers.org/ncbigene/629",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "complement factor B"
            },
            "metanode": "Gene"
        },
        {
            "id": 37097,
            "identifier": "9120",
            "identifier_type": "int",
            "name": "SLC16A6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9120",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "solute carrier family 16, member 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 37098,
            "identifier": "50651",
            "identifier_type": "int",
            "name": "SLC45A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/50651",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "solute carrier family 45, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 37099,
            "identifier": "GO:0070350",
            "identifier_type": "str",
            "name": "regulation of white fat cell proliferation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070350",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37100,
            "identifier": "DB00918",
            "identifier_type": "str",
            "name": "Almotriptan",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00918",
                "inchi": "InChI=1S/C17H25N3O2S/c1-19(2)10-7-15-12-18-17-6-5-14(11-16(15)17)13-23(21,22)20-8-3-4-9-20/h5-6,11-12,18H,3-4,7-10,13H2,1-2H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WKEMJKQOLOHJLZ-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 37101,
            "identifier": "DB04786",
            "identifier_type": "str",
            "name": "Suramin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB04786",
                "inchi": "InChI=1S/C51H40N6O23S6/c1-25-9-11-29(49(60)54-37-13-15-41(83(69,70)71)35-21-33(81(63,64)65)23-43(45(35)37)85(75,76)77)19-39(25)56-47(58)27-5-3-7-31(17-27)52-51(62)53-32-8-4-6-28(18-32)48(59)57-40-20-30(12-10-26(40)2)50(61)55-38-14-16-42(84(72,73)74)36-22-34(82(66,67)68)24-44(46(36)38)86(78,79)80/h3-24H,1-2H3,(H,54,60)(H,55,61)(H,56,58)(H,57,59)(H2,52,53,62)(H,63,64,65)(H,66,67,68)(H,69,70,71)(H,72,73,74)(H,75,76,77)(H,78,79,80)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=FIAFUQMPZJWCLV-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 37102,
            "identifier": "GO:0005035",
            "identifier_type": "str",
            "name": "death receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005035",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 37103,
            "identifier": "GO:0003203",
            "identifier_type": "str",
            "name": "endocardial cushion morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003203",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37104,
            "identifier": "27231",
            "identifier_type": "int",
            "name": "NMRK2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/27231",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "nicotinamide riboside kinase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 37105,
            "identifier": "2954",
            "identifier_type": "int",
            "name": "GSTZ1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2954",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "glutathione S-transferase zeta 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 37106,
            "identifier": "C0730328",
            "identifier_type": "str",
            "name": "Central serous retinopathy",
            "properties": {
                "url": "http://identifiers.org/umls/C0730328",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37107,
            "identifier": "GO:0016557",
            "identifier_type": "str",
            "name": "peroxisome membrane biogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016557",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37108,
            "identifier": "57515",
            "identifier_type": "int",
            "name": "SERINC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57515",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "serine incorporator 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 37109,
            "identifier": "GO:0044703",
            "identifier_type": "str",
            "name": "multi-organism reproductive process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044703",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37110,
            "identifier": "80178",
            "identifier_type": "int",
            "name": "C16orf59",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80178",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "chromosome 16 open reading frame 59"
            },
            "metanode": "Gene"
        },
        {
            "id": 37111,
            "identifier": "GO:0060561",
            "identifier_type": "str",
            "name": "apoptotic process involved in morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060561",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37112,
            "identifier": "N0000000196",
            "identifier_type": "str",
            "name": "GABA A Agonists",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000000196",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 37113,
            "identifier": "GO:0061702",
            "identifier_type": "str",
            "name": "inflammasome complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0061702",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 37502,
            "identifier": "GO:0051434",
            "identifier_type": "str",
            "name": "BH3 domain binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051434",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 37114,
            "identifier": "5423",
            "identifier_type": "int",
            "name": "POLB",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5423",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "polymerase (DNA directed), beta"
            },
            "metanode": "Gene"
        },
        {
            "id": 37115,
            "identifier": "GO:0005542",
            "identifier_type": "str",
            "name": "folic acid binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005542",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 37116,
            "identifier": "GO:0033038",
            "identifier_type": "str",
            "name": "bitter taste receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033038",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 37117,
            "identifier": "C0233571",
            "identifier_type": "str",
            "name": "Excitement",
            "properties": {
                "url": "http://identifiers.org/umls/C0233571",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37118,
            "identifier": "23518",
            "identifier_type": "int",
            "name": "R3HDM1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23518",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "R3H domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 37119,
            "identifier": "163081",
            "identifier_type": "int",
            "name": "ZNF567",
            "properties": {
                "url": "http://identifiers.org/ncbigene/163081",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 567"
            },
            "metanode": "Gene"
        }
    ]
}