Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=37325

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=37350",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=37300",
    "results": [
        {
            "id": 37318,
            "identifier": "GO:0050482",
            "identifier_type": "str",
            "name": "arachidonic acid secretion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050482",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37319,
            "identifier": "80008",
            "identifier_type": "int",
            "name": "TMEM156",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80008",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "transmembrane protein 156"
            },
            "metanode": "Gene"
        },
        {
            "id": 37320,
            "identifier": "5253",
            "identifier_type": "int",
            "name": "PHF2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5253",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "PHD finger protein 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 37321,
            "identifier": "51307",
            "identifier_type": "int",
            "name": "FAM53C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51307",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "family with sequence similarity 53, member C"
            },
            "metanode": "Gene"
        },
        {
            "id": 37322,
            "identifier": "GO:0071889",
            "identifier_type": "str",
            "name": "14-3-3 protein binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071889",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 37323,
            "identifier": "C0948525",
            "identifier_type": "str",
            "name": "Musculoskeletal stiffness",
            "properties": {
                "url": "http://identifiers.org/umls/C0948525",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37324,
            "identifier": "GO:0032142",
            "identifier_type": "str",
            "name": "single guanine insertion binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032142",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 37325,
            "identifier": "116115",
            "identifier_type": "int",
            "name": "ZNF526",
            "properties": {
                "url": "http://identifiers.org/ncbigene/116115",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 526"
            },
            "metanode": "Gene"
        },
        {
            "id": 37326,
            "identifier": "GO:0007006",
            "identifier_type": "str",
            "name": "mitochondrial membrane organization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007006",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37327,
            "identifier": "23220",
            "identifier_type": "int",
            "name": "DTX4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23220",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "deltex 4, E3 ubiquitin ligase"
            },
            "metanode": "Gene"
        },
        {
            "id": 37328,
            "identifier": "7706",
            "identifier_type": "int",
            "name": "TRIM25",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7706",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "tripartite motif containing 25"
            },
            "metanode": "Gene"
        },
        {
            "id": 37329,
            "identifier": "53632",
            "identifier_type": "int",
            "name": "PRKAG3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/53632",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "protein kinase, AMP-activated, gamma 3 non-catalytic subunit"
            },
            "metanode": "Gene"
        },
        {
            "id": 37330,
            "identifier": "DB00681",
            "identifier_type": "str",
            "name": "Amphotericin B",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00681",
                "inchi": "InChI=1S/C47H73NO17/c1-27-17-15-13-11-9-7-5-6-8-10-12-14-16-18-34(64-46-44(58)41(48)43(57)30(4)63-46)24-38-40(45(59)60)37(54)26-47(61,65-38)25-33(51)22-36(53)35(52)20-19-31(49)21-32(50)23-39(55)62-29(3)28(2)42(27)56/h5-18,27-38,40-44,46,49-54,56-58,61H,19-26,48H2,1-4H3,(H,59,60)/b6-5+,9-7+,10-8+,13-11+,14-12+,17-15+,18-16+/t27-,28-,29-,30+,31+,32+,33-,34-,35+,36+,37-,38-,40+,41-,42+,43+,44-,46-,47+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=APKFDSVGJQXUKY-INPOYWNPSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 37331,
            "identifier": "199746",
            "identifier_type": "int",
            "name": "U2AF1L4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/199746",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "U2 small nuclear RNA auxiliary factor 1-like 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 37332,
            "identifier": "339453",
            "identifier_type": "int",
            "name": "TMEM240",
            "properties": {
                "url": "http://identifiers.org/ncbigene/339453",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "transmembrane protein 240"
            },
            "metanode": "Gene"
        },
        {
            "id": 37333,
            "identifier": "GO:0060920",
            "identifier_type": "str",
            "name": "cardiac pacemaker cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060920",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37334,
            "identifier": "C0022735",
            "identifier_type": "str",
            "name": "Klinefelter's syndrome",
            "properties": {
                "url": "http://identifiers.org/umls/C0022735",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37335,
            "identifier": "C0853890",
            "identifier_type": "str",
            "name": "Blood gastrin increased",
            "properties": {
                "url": "http://identifiers.org/umls/C0853890",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37336,
            "identifier": "122481",
            "identifier_type": "int",
            "name": "AK7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/122481",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "adenylate kinase 7"
            },
            "metanode": "Gene"
        },
        {
            "id": 37337,
            "identifier": "56101",
            "identifier_type": "int",
            "name": "PCDHGB5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56101",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "protocadherin gamma subfamily B, 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 37338,
            "identifier": "64848",
            "identifier_type": "int",
            "name": "YTHDC2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64848",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "YTH domain containing 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 37339,
            "identifier": "C0877406",
            "identifier_type": "str",
            "name": "Performance status decreased",
            "properties": {
                "url": "http://identifiers.org/umls/C0877406",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37340,
            "identifier": "WP3595_r84854",
            "identifier_type": "str",
            "name": "mir-124 predicted interactions with cell cycle and differentiation ",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP3595_r84854",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 37341,
            "identifier": "79634",
            "identifier_type": "int",
            "name": "SCRN3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79634",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "secernin 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 37342,
            "identifier": "100144748",
            "identifier_type": "int",
            "name": "KLLN",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100144748",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "killin, p53-regulated DNA replication inhibitor"
            },
            "metanode": "Gene"
        }
    ]
}