Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=37400

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=37425",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=37375",
    "results": [
        {
            "id": 37393,
            "identifier": "PC7_5989",
            "identifier_type": "str",
            "name": "Nuclear Receptor transcription pathway",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 37394,
            "identifier": "C0019212",
            "identifier_type": "str",
            "name": "Hepatorenal syndrome",
            "properties": {
                "url": "http://identifiers.org/umls/C0019212",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37395,
            "identifier": "GO:0061383",
            "identifier_type": "str",
            "name": "trabecula morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0061383",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37396,
            "identifier": "C0853619",
            "identifier_type": "str",
            "name": "Local swelling",
            "properties": {
                "url": "http://identifiers.org/umls/C0853619",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37429,
            "identifier": "9099",
            "identifier_type": "int",
            "name": "USP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9099",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "ubiquitin specific peptidase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 37791,
            "identifier": "C0085160",
            "identifier_type": "str",
            "name": "Hidradenitis",
            "properties": {
                "url": "http://identifiers.org/umls/C0085160",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37397,
            "identifier": "DB01061",
            "identifier_type": "str",
            "name": "Azlocillin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01061",
                "inchi": "InChI=1S/C20H23N5O6S/c1-20(2)13(17(28)29)25-15(27)12(16(25)32-20)22-14(26)11(10-6-4-3-5-7-10)23-19(31)24-9-8-21-18(24)30/h3-7,11-13,16H,8-9H2,1-2H3,(H,21,30)(H,22,26)(H,23,31)(H,28,29)/t11-,12-,13+,16-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JTWOMNBEOCYFNV-NFFDBFGFSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 37398,
            "identifier": "28",
            "identifier_type": "int",
            "name": "ABO",
            "properties": {
                "url": "http://identifiers.org/ncbigene/28",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)"
            },
            "metanode": "Gene"
        },
        {
            "id": 37399,
            "identifier": "GO:0031461",
            "identifier_type": "str",
            "name": "cullin-RING ubiquitin ligase complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031461",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 37400,
            "identifier": "GO:0019626",
            "identifier_type": "str",
            "name": "short-chain fatty acid catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019626",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37401,
            "identifier": "11244",
            "identifier_type": "int",
            "name": "ZHX1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11244",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "zinc fingers and homeoboxes 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 37402,
            "identifier": "DB00254",
            "identifier_type": "str",
            "name": "Doxycycline",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00254",
                "inchi": "InChI=1S/C22H24N2O8/c1-7-8-5-4-6-9(25)11(8)16(26)12-10(7)17(27)14-15(24(2)3)18(28)13(21(23)31)20(30)22(14,32)19(12)29/h4-7,10,14-15,17,25,27-29,32H,1-3H3,(H2,23,31)/t7-,10+,14+,15-,17-,22-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JBIWCJUYHHGXTC-AKNGSSGZSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 37403,
            "identifier": "WP2485_r70025",
            "identifier_type": "str",
            "name": "NAD Biosynthesis II (from tryptophan)",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP2485_r70025",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 37404,
            "identifier": "C1536052",
            "identifier_type": "str",
            "name": "Oral mucosal exfoliation",
            "properties": {
                "url": "http://identifiers.org/umls/C1536052",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37405,
            "identifier": "151648",
            "identifier_type": "int",
            "name": "SGOL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/151648",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "shugoshin-like 1 (S. pombe)"
            },
            "metanode": "Gene"
        },
        {
            "id": 37406,
            "identifier": "29083",
            "identifier_type": "int",
            "name": "GTPBP8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/29083",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "GTP-binding protein 8 (putative)"
            },
            "metanode": "Gene"
        },
        {
            "id": 37407,
            "identifier": "5078",
            "identifier_type": "int",
            "name": "PAX4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5078",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "paired box 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 37408,
            "identifier": "GO:0097117",
            "identifier_type": "str",
            "name": "guanylate kinase-associated protein clustering",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0097117",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37409,
            "identifier": "54972",
            "identifier_type": "int",
            "name": "TMEM132A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54972",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "transmembrane protein 132A"
            },
            "metanode": "Gene"
        },
        {
            "id": 37410,
            "identifier": "112714",
            "identifier_type": "int",
            "name": "TUBA3E",
            "properties": {
                "url": "http://identifiers.org/ncbigene/112714",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "tubulin, alpha 3e"
            },
            "metanode": "Gene"
        },
        {
            "id": 37411,
            "identifier": "22917",
            "identifier_type": "int",
            "name": "ZP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22917",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "zona pellucida glycoprotein 1 (sperm receptor)"
            },
            "metanode": "Gene"
        },
        {
            "id": 37412,
            "identifier": "C0857323",
            "identifier_type": "str",
            "name": "Angioedema of larynx",
            "properties": {
                "url": "http://identifiers.org/umls/C0857323",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37413,
            "identifier": "7531",
            "identifier_type": "int",
            "name": "YWHAE",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7531",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon"
            },
            "metanode": "Gene"
        },
        {
            "id": 37414,
            "identifier": "GO:0046031",
            "identifier_type": "str",
            "name": "ADP metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046031",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37415,
            "identifier": "GO:0008379",
            "identifier_type": "str",
            "name": "thioredoxin peroxidase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008379",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}