Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=37700

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=37725",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=37675",
    "results": [
        {
            "id": 37695,
            "identifier": "GO:0009078",
            "identifier_type": "str",
            "name": "pyruvate family amino acid metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009078",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37696,
            "identifier": "GO:0001781",
            "identifier_type": "str",
            "name": "neutrophil apoptotic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001781",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37697,
            "identifier": "UBERON:0002081",
            "identifier_type": "str",
            "name": "cardiac atrium",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0002081",
                "bto_id": "BTO:0000903",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D006325"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 37698,
            "identifier": "GO:0061505",
            "identifier_type": "str",
            "name": "DNA topoisomerase II activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0061505",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 37699,
            "identifier": "1762",
            "identifier_type": "int",
            "name": "DMWD",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1762",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "dystrophia myotonica, WD repeat containing"
            },
            "metanode": "Gene"
        },
        {
            "id": 37700,
            "identifier": "55325",
            "identifier_type": "int",
            "name": "UFSP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55325",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "UFM1-specific peptidase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 37701,
            "identifier": "64072",
            "identifier_type": "int",
            "name": "CDH23",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64072",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "cadherin-related 23"
            },
            "metanode": "Gene"
        },
        {
            "id": 37702,
            "identifier": "GO:0070699",
            "identifier_type": "str",
            "name": "type II activin receptor binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070699",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 37703,
            "identifier": "GO:0001659",
            "identifier_type": "str",
            "name": "temperature homeostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001659",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37704,
            "identifier": "GO:0060669",
            "identifier_type": "str",
            "name": "embryonic placenta morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060669",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37705,
            "identifier": "C0178879",
            "identifier_type": "str",
            "name": "Urinary tract obstruction",
            "properties": {
                "url": "http://identifiers.org/umls/C0178879",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37706,
            "identifier": "GO:0008043",
            "identifier_type": "str",
            "name": "intracellular ferritin complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008043",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 37707,
            "identifier": "C0151636",
            "identifier_type": "str",
            "name": "Ventricular extrasystoles",
            "properties": {
                "url": "http://identifiers.org/umls/C0151636",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37708,
            "identifier": "DB01399",
            "identifier_type": "str",
            "name": "Salsalate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01399",
                "inchi": "InChI=1S/C14H10O5/c15-11-7-3-1-5-9(11)14(18)19-12-8-4-2-6-10(12)13(16)17/h1-8,15H,(H,16,17)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WVYADZUPLLSGPU-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 37709,
            "identifier": "GO:0061158",
            "identifier_type": "str",
            "name": "3'-UTR-mediated mRNA destabilization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0061158",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37710,
            "identifier": "100130778",
            "identifier_type": "int",
            "name": "LOC100130778",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100130778",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "uncharacterized LOC100130778"
            },
            "metanode": "Gene"
        },
        {
            "id": 37711,
            "identifier": "127253",
            "identifier_type": "int",
            "name": "TYW3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/127253",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 37712,
            "identifier": "DB01225",
            "identifier_type": "str",
            "name": "Enoxaparin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01225",
                "inchi": "InChI=1S/C26H42N2O37S5/c1-4(30)27-7-9(31)13(6(56-23(7)39)3-55-67(43,44)45)58-26-19(65-70(52,53)54)12(34)16(20(62-26)22(37)38)60-24-8(28-66(40,41)42)15(63-68(46,47)48)14(5(2-29)57-24)59-25-18(64-69(49,50)51)11(33)10(32)17(61-25)21(35)36/h5-20,23-26,28-29,31-34,39H,2-3H2,1H3,(H,27,30)(H,35,36)(H,37,38)(H,40,41,42)(H,43,44,45)(H,46,47,48)(H,49,50,51)(H,52,53,54)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HTTJABKRGRZYRN-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 37713,
            "identifier": "11223",
            "identifier_type": "int",
            "name": "MST1L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11223",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "macrophage stimulating 1-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 37714,
            "identifier": "PC7_7733",
            "identifier_type": "str",
            "name": "Synthesis of GDP-mannose",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 37715,
            "identifier": "22824",
            "identifier_type": "int",
            "name": "HSPA4L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22824",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "heat shock 70kDa protein 4-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 37716,
            "identifier": "29062",
            "identifier_type": "int",
            "name": "WDR91",
            "properties": {
                "url": "http://identifiers.org/ncbigene/29062",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "WD repeat domain 91"
            },
            "metanode": "Gene"
        },
        {
            "id": 37828,
            "identifier": "C0282005",
            "identifier_type": "str",
            "name": "Scrotal swelling",
            "properties": {
                "url": "http://identifiers.org/umls/C0282005",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37717,
            "identifier": "4913",
            "identifier_type": "int",
            "name": "NTHL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4913",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "nth endonuclease III-like 1 (E. coli)"
            },
            "metanode": "Gene"
        },
        {
            "id": 37718,
            "identifier": "GO:0050308",
            "identifier_type": "str",
            "name": "sugar-phosphatase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050308",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}