Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=37975

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=38000",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=37950",
    "results": [
        {
            "id": 37970,
            "identifier": "DB01301",
            "identifier_type": "str",
            "name": "Rolitetracycline",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01301",
                "inchi": "InChI=1S/C27H33N3O8/c1-26(37)13-7-6-8-16(31)17(13)21(32)18-14(26)11-15-20(29(2)3)22(33)19(24(35)27(15,38)23(18)34)25(36)28-12-30-9-4-5-10-30/h6-8,14-15,20,31,33-34,37-38H,4-5,9-12H2,1-3H3,(H,28,36)/t14-,15-,20-,26+,27-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HMEYVGGHISAPJR-IAHYZSEUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 37971,
            "identifier": "101928589",
            "identifier_type": "int",
            "name": "LOC101928589",
            "properties": {
                "url": "http://identifiers.org/ncbigene/101928589",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "uncharacterized LOC101928589"
            },
            "metanode": "Gene"
        },
        {
            "id": 37972,
            "identifier": "C0238304",
            "identifier_type": "str",
            "name": "Chronic interstitial nephritis",
            "properties": {
                "url": "http://identifiers.org/umls/C0238304",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37973,
            "identifier": "7776",
            "identifier_type": "int",
            "name": "ZNF236",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7776",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "zinc finger protein 236"
            },
            "metanode": "Gene"
        },
        {
            "id": 37974,
            "identifier": "C0281784",
            "identifier_type": "str",
            "name": "Meningioma benign",
            "properties": {
                "url": "http://identifiers.org/umls/C0281784",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37975,
            "identifier": "GO:0016603",
            "identifier_type": "str",
            "name": "glutaminyl-peptide cyclotransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016603",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 37976,
            "identifier": "84002",
            "identifier_type": "int",
            "name": "B3GNT5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84002",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 37977,
            "identifier": "WP28_r71888",
            "identifier_type": "str",
            "name": "Selenium Metabolism and Selenoproteins",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP28_r71888",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 37978,
            "identifier": "C0221166",
            "identifier_type": "str",
            "name": "Paraparesis",
            "properties": {
                "url": "http://identifiers.org/umls/C0221166",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37979,
            "identifier": "GO:0030274",
            "identifier_type": "str",
            "name": "LIM domain binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030274",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 37980,
            "identifier": "DOID:418",
            "identifier_type": "str",
            "name": "systemic scleroderma",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/DOID_418",
                "source": "Disease Ontology",
                "license": "CC BY 3.0"
            },
            "metanode": "Disease"
        },
        {
            "id": 37981,
            "identifier": "DB00639",
            "identifier_type": "str",
            "name": "Butoconazole",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00639",
                "inchi": "InChI=1S/C19H17Cl3N2S/c20-15-7-4-14(5-8-15)6-9-16(12-24-11-10-23-13-24)25-19-17(21)2-1-3-18(19)22/h1-5,7-8,10-11,13,16H,6,9,12H2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=SWLMUYACZKCSHZ-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 37982,
            "identifier": "56171",
            "identifier_type": "int",
            "name": "DNAH7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56171",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "dynein, axonemal, heavy chain 7"
            },
            "metanode": "Gene"
        },
        {
            "id": 37983,
            "identifier": "102724594",
            "identifier_type": "int",
            "name": "LOC102724594",
            "properties": {
                "url": "http://identifiers.org/ncbigene/102724594",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "splicing factor U2AF 35 kDa subunit"
            },
            "metanode": "Gene"
        },
        {
            "id": 37984,
            "identifier": "C0853908",
            "identifier_type": "str",
            "name": "Oropharyngeal swelling",
            "properties": {
                "url": "http://identifiers.org/umls/C0853908",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37985,
            "identifier": "30812",
            "identifier_type": "int",
            "name": "SOX8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/30812",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "SRY (sex determining region Y)-box 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 37986,
            "identifier": "C0338908",
            "identifier_type": "str",
            "name": "Anxiety depression",
            "properties": {
                "url": "http://identifiers.org/umls/C0338908",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37987,
            "identifier": "GO:1904024",
            "identifier_type": "str",
            "name": "negative regulation of glucose catabolic process to lactate via pyruvate",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1904024",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37988,
            "identifier": "GO:0048145",
            "identifier_type": "str",
            "name": "regulation of fibroblast proliferation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048145",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37989,
            "identifier": "9344",
            "identifier_type": "int",
            "name": "TAOK2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9344",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "TAO kinase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 37990,
            "identifier": "N0000190118",
            "identifier_type": "str",
            "name": "Cytochrome P450 3A Inducers",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000190118",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 37991,
            "identifier": "GO:0021707",
            "identifier_type": "str",
            "name": "cerebellar granule cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021707",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 37992,
            "identifier": "C1328540",
            "identifier_type": "str",
            "name": "Peripheral vasodilatation",
            "properties": {
                "url": "http://identifiers.org/umls/C1328540",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 37993,
            "identifier": "100529251",
            "identifier_type": "int",
            "name": "CKLF-CMTM1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100529251",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "CKLF-CMTM1 readthrough"
            },
            "metanode": "Gene"
        },
        {
            "id": 37994,
            "identifier": "GO:0018195",
            "identifier_type": "str",
            "name": "peptidyl-arginine modification",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0018195",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}