Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=39325

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=39350",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=39300",
    "results": [
        {
            "id": 39324,
            "identifier": "GO:0004522",
            "identifier_type": "str",
            "name": "ribonuclease A activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004522",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 39325,
            "identifier": "28227",
            "identifier_type": "int",
            "name": "PPP2R3B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/28227",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X|Y",
                "description": "protein phosphatase 2, regulatory subunit B'', beta"
            },
            "metanode": "Gene"
        },
        {
            "id": 39326,
            "identifier": "4094",
            "identifier_type": "int",
            "name": "MAF",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4094",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog"
            },
            "metanode": "Gene"
        },
        {
            "id": 39327,
            "identifier": "C0151772",
            "identifier_type": "str",
            "name": "Manic psychosis",
            "properties": {
                "url": "http://identifiers.org/umls/C0151772",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 39328,
            "identifier": "58527",
            "identifier_type": "int",
            "name": "ABRACL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/58527",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "ABRA C-terminal like"
            },
            "metanode": "Gene"
        },
        {
            "id": 39329,
            "identifier": "GO:0060915",
            "identifier_type": "str",
            "name": "mesenchymal cell differentiation involved in lung development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060915",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 39330,
            "identifier": "11086",
            "identifier_type": "int",
            "name": "ADAM29",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11086",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "ADAM metallopeptidase domain 29"
            },
            "metanode": "Gene"
        },
        {
            "id": 39331,
            "identifier": "C0700345",
            "identifier_type": "str",
            "name": "Vulvovaginal candidiasis",
            "properties": {
                "url": "http://identifiers.org/umls/C0700345",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 39332,
            "identifier": "D059265",
            "identifier_type": "str",
            "name": "Visceral Pain",
            "properties": {
                "url": "http://identifiers.org/mesh/D059265",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 39333,
            "identifier": "653857",
            "identifier_type": "int",
            "name": "ACTR3C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/653857",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "ARP3 actin-related protein 3 homolog C (yeast)"
            },
            "metanode": "Gene"
        },
        {
            "id": 39334,
            "identifier": "GO:0038100",
            "identifier_type": "str",
            "name": "nodal binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0038100",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 39335,
            "identifier": "4776",
            "identifier_type": "int",
            "name": "NFATC4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4776",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 39336,
            "identifier": "54814",
            "identifier_type": "int",
            "name": "QPCTL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54814",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "glutaminyl-peptide cyclotransferase-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 39337,
            "identifier": "9798",
            "identifier_type": "int",
            "name": "IST1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9798",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "increased sodium tolerance 1 homolog (yeast)"
            },
            "metanode": "Gene"
        },
        {
            "id": 39338,
            "identifier": "100187907",
            "identifier_type": "int",
            "name": "TRAP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100187907",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "description": "triiodothyronine receptor auxiliary protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 39339,
            "identifier": "DB01185",
            "identifier_type": "str",
            "name": "Fluoxymesterone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01185",
                "inchi": "InChI=1S/C20H29FO3/c1-17-8-6-13(22)10-12(17)4-5-15-14-7-9-19(3,24)18(14,2)11-16(23)20(15,17)21/h10,14-16,23-24H,4-9,11H2,1-3H3/t14-,15-,16-,17-,18-,19-,20-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=YLRFCQOZQXIBAB-RBZZARIASA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 39340,
            "identifier": "124401",
            "identifier_type": "int",
            "name": "ANKS3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/124401",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "ankyrin repeat and sterile alpha motif domain containing 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 39341,
            "identifier": "22887",
            "identifier_type": "int",
            "name": "FOXJ3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22887",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "forkhead box J3"
            },
            "metanode": "Gene"
        },
        {
            "id": 39342,
            "identifier": "7373",
            "identifier_type": "int",
            "name": "COL14A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7373",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "collagen, type XIV, alpha 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 39343,
            "identifier": "GO:0008410",
            "identifier_type": "str",
            "name": "CoA-transferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008410",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 39344,
            "identifier": "388886",
            "identifier_type": "int",
            "name": "LRRC75B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/388886",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "leucine rich repeat containing 75B"
            },
            "metanode": "Gene"
        },
        {
            "id": 39345,
            "identifier": "GO:0007571",
            "identifier_type": "str",
            "name": "age-dependent general metabolic decline",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007571",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 39346,
            "identifier": "1949",
            "identifier_type": "int",
            "name": "EFNB3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1949",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "ephrin-B3"
            },
            "metanode": "Gene"
        },
        {
            "id": 39347,
            "identifier": "55752",
            "identifier_type": "int",
            "name": "SEPT11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55752",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "septin 11"
            },
            "metanode": "Gene"
        },
        {
            "id": 39348,
            "identifier": "DB01212",
            "identifier_type": "str",
            "name": "Ceftriaxone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01212",
                "inchi": "InChI=1S/C18H18N8O7S3/c1-25-18(22-12(28)13(29)23-25)36-4-6-3-34-15-9(14(30)26(15)10(6)16(31)32)21-11(27)8(24-33-2)7-5-35-17(19)20-7/h5,9,15H,3-4H2,1-2H3,(H2,19,20)(H,21,27)(H,23,29)(H,31,32)/b24-8-/t9-,15-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VAAUVRVFOQPIGI-SPQHTLEESA-N"
            },
            "metanode": "Compound"
        }
    ]
}