Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=39650

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=39675",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=39625",
    "results": [
        {
            "id": 39649,
            "identifier": "6320",
            "identifier_type": "int",
            "name": "CLEC11A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6320",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "C-type lectin domain family 11, member A"
            },
            "metanode": "Gene"
        },
        {
            "id": 39650,
            "identifier": "2651",
            "identifier_type": "int",
            "name": "GCNT2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2651",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)"
            },
            "metanode": "Gene"
        },
        {
            "id": 39651,
            "identifier": "284040",
            "identifier_type": "int",
            "name": "CDRT4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/284040",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "CMT1A duplicated region transcript 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 39652,
            "identifier": "GO:0044406",
            "identifier_type": "str",
            "name": "adhesion of symbiont to host",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044406",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 39653,
            "identifier": "10921",
            "identifier_type": "int",
            "name": "RNPS1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10921",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "RNA binding protein S1, serine-rich domain"
            },
            "metanode": "Gene"
        },
        {
            "id": 39654,
            "identifier": "UBERON:0001183",
            "identifier_type": "str",
            "name": "inferior mesenteric artery",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0001183",
                "bto_id": "BTO:0002302",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D017537"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 39655,
            "identifier": "DB00941",
            "identifier_type": "str",
            "name": "Hexafluronium",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00941",
                "inchi": "InChI=1S/C36H42N2.C2H6/c1-37(2,35-31-21-11-7-17-27(31)28-18-8-12-22-32(28)35)25-15-5-6-16-26-38(3,4)36-33-23-13-9-19-29(33)30-20-10-14-24-34(30)36;1-2/h7-14,17-24,35-36H,5-6,15-16,25-26H2,1-4H3;1-2H3/q+2;",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UUNOBWWOFTYQRY-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 39656,
            "identifier": "GO:0046661",
            "identifier_type": "str",
            "name": "male sex differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046661",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 39657,
            "identifier": "N0000185507",
            "identifier_type": "str",
            "name": "Cytochrome P450 2C9 Inducers",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000185507",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 39658,
            "identifier": "GO:0002062",
            "identifier_type": "str",
            "name": "chondrocyte differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002062",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 39659,
            "identifier": "102725121",
            "identifier_type": "int",
            "name": "LOC102725121",
            "properties": {
                "url": "http://identifiers.org/ncbigene/102725121",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "putative ATP-dependent RNA helicase DDX12"
            },
            "metanode": "Gene"
        },
        {
            "id": 39660,
            "identifier": "C0542243",
            "identifier_type": "str",
            "name": "Toxic reaction (NOS)",
            "properties": {
                "url": "http://identifiers.org/umls/C0542243",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 39661,
            "identifier": "22850",
            "identifier_type": "int",
            "name": "ADNP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22850",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "ADNP homeobox 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 39662,
            "identifier": "GO:0050848",
            "identifier_type": "str",
            "name": "regulation of calcium-mediated signaling",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050848",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 39663,
            "identifier": "GO:0010874",
            "identifier_type": "str",
            "name": "regulation of cholesterol efflux",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010874",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 39664,
            "identifier": "PC7_6461",
            "identifier_type": "str",
            "name": "Phospholipase C-mediated cascade",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 39665,
            "identifier": "26189",
            "identifier_type": "int",
            "name": "OR1A2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26189",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "olfactory receptor, family 1, subfamily A, member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 39666,
            "identifier": "2040",
            "identifier_type": "int",
            "name": "STOM",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2040",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "stomatin"
            },
            "metanode": "Gene"
        },
        {
            "id": 39667,
            "identifier": "55603",
            "identifier_type": "int",
            "name": "FAM46A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55603",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "family with sequence similarity 46, member A"
            },
            "metanode": "Gene"
        },
        {
            "id": 39668,
            "identifier": "GO:0031386",
            "identifier_type": "str",
            "name": "protein tag",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031386",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 39669,
            "identifier": "GO:0045591",
            "identifier_type": "str",
            "name": "positive regulation of regulatory T cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045591",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 39670,
            "identifier": "GO:0071305",
            "identifier_type": "str",
            "name": "cellular response to vitamin D",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071305",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 39671,
            "identifier": "138428",
            "identifier_type": "int",
            "name": "PTRH1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/138428",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 39672,
            "identifier": "DB00613",
            "identifier_type": "str",
            "name": "Amodiaquine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00613",
                "inchi": "InChI=1S/C20H22ClN3O/c1-3-24(4-2)13-14-11-16(6-8-20(14)25)23-18-9-10-22-19-12-15(21)5-7-17(18)19/h5-12,25H,3-4,13H2,1-2H3,(H,22,23)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OVCDSSHSILBFBN-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 39673,
            "identifier": "79754",
            "identifier_type": "int",
            "name": "ASB13",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79754",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "ankyrin repeat and SOCS box containing 13"
            },
            "metanode": "Gene"
        }
    ]
}