Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=40125

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=40150",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=40100",
    "results": [
        {
            "id": 40124,
            "identifier": "166379",
            "identifier_type": "int",
            "name": "BBS12",
            "properties": {
                "url": "http://identifiers.org/ncbigene/166379",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "Bardet-Biedl syndrome 12"
            },
            "metanode": "Gene"
        },
        {
            "id": 40125,
            "identifier": "105373989",
            "identifier_type": "int",
            "name": "LOC105373989",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105373989",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "serine/arginine repetitive matrix protein 1-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 40126,
            "identifier": "GO:0044598",
            "identifier_type": "str",
            "name": "doxorubicin metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044598",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40127,
            "identifier": "GO:0031086",
            "identifier_type": "str",
            "name": "nuclear-transcribed mRNA catabolic process, deadenylation-independent decay",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031086",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40128,
            "identifier": "GO:0050774",
            "identifier_type": "str",
            "name": "negative regulation of dendrite morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050774",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40129,
            "identifier": "WP1471_r82750",
            "identifier_type": "str",
            "name": "TOR Signaling",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP1471_r82750",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 40130,
            "identifier": "64786",
            "identifier_type": "int",
            "name": "TBC1D15",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64786",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "TBC1 domain family, member 15"
            },
            "metanode": "Gene"
        },
        {
            "id": 40131,
            "identifier": "GO:0042441",
            "identifier_type": "str",
            "name": "eye pigment metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042441",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40132,
            "identifier": "79828",
            "identifier_type": "int",
            "name": "METTL8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79828",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "methyltransferase like 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 40133,
            "identifier": "961",
            "identifier_type": "int",
            "name": "CD47",
            "properties": {
                "url": "http://identifiers.org/ncbigene/961",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "CD47 molecule"
            },
            "metanode": "Gene"
        },
        {
            "id": 40134,
            "identifier": "DB00569",
            "identifier_type": "str",
            "name": "Fondaparinux sodium",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00569",
                "inchi": "InChI=1S/C31H53N3O49S8.10Na/c1-69-27-9(33-85(48,49)50)13(37)17(6(74-27)3-71-88(57,58)59)76-31-22(83-91(66,67)68)16(40)21(24(81-31)26(43)44)79-29-10(34-86(51,52)53)19(82-90(63,64)65)18(7(75-29)4-72-89(60,61)62)77-30-15(39)14(38)20(23(80-30)25(41)42)78-28-8(32-84(45,46)47)12(36)11(35)5(73-28)2-70-87(54,55)56;;;;;;;;;;/h5-24,27-40H,2-4H2,1H3,(H,41,42)(H,43,44)(H,45,46,47)(H,48,49,50)(H,51,52,53)(H,54,55,56)(H,57,58,59)(H,60,61,62)(H,63,64,65)(H,66,67,68);;;;;;;;;;/q;10*+1/p-8/t5-,6-,7-,8-,9-,10-,11-,12-,13-,14-,15-,16+,17-,18-,19-,20+,21+,22-,23+,24-,27+,28-,29-,30-,31-;;;;;;;;;;/m1........../s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=XEKSTYNIJLDDAZ-JASSWCPGSA-F"
            },
            "metanode": "Compound"
        },
        {
            "id": 40135,
            "identifier": "C0235857",
            "identifier_type": "str",
            "name": "Lacrimation decreased",
            "properties": {
                "url": "http://identifiers.org/umls/C0235857",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 40136,
            "identifier": "PC7_7750",
            "identifier_type": "str",
            "name": "Synthesis of PIPs at the late endosome membrane",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 40137,
            "identifier": "259295",
            "identifier_type": "int",
            "name": "TAS2R20",
            "properties": {
                "url": "http://identifiers.org/ncbigene/259295",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "taste receptor, type 2, member 20"
            },
            "metanode": "Gene"
        },
        {
            "id": 40138,
            "identifier": "GO:0042645",
            "identifier_type": "str",
            "name": "mitochondrial nucleoid",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042645",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 40139,
            "identifier": "C0542027",
            "identifier_type": "str",
            "name": "Hypercoagulation",
            "properties": {
                "url": "http://identifiers.org/umls/C0542027",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 40140,
            "identifier": "GO:0043307",
            "identifier_type": "str",
            "name": "eosinophil activation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043307",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40141,
            "identifier": "3430",
            "identifier_type": "int",
            "name": "IFI35",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3430",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "interferon-induced protein 35"
            },
            "metanode": "Gene"
        },
        {
            "id": 40142,
            "identifier": "GO:0048278",
            "identifier_type": "str",
            "name": "vesicle docking",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048278",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40143,
            "identifier": "UBERON:0000985",
            "identifier_type": "str",
            "name": "axillary vein",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0000985",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D001367"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 40144,
            "identifier": "GO:0044146",
            "identifier_type": "str",
            "name": "negative regulation of growth of symbiont involved in interaction with host",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044146",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40145,
            "identifier": "DB00485",
            "identifier_type": "str",
            "name": "Dicloxacillin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00485",
                "inchi": "InChI=1S/C19H17Cl2N3O5S/c1-7-10(12(23-29-7)11-8(20)5-4-6-9(11)21)15(25)22-13-16(26)24-14(18(27)28)19(2,3)30-17(13)24/h4-6,13-14,17H,1-3H3,(H,22,25)(H,27,28)/t13-,14+,17-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=YFAGHNZHGGCZAX-JKIFEVAISA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 40146,
            "identifier": "GO:0021812",
            "identifier_type": "str",
            "name": "neuronal-glial interaction involved in cerebral cortex radial glia guided migration",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021812",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40147,
            "identifier": "DB00214",
            "identifier_type": "str",
            "name": "Torasemide",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00214",
                "inchi": "InChI=1S/C16H20N4O3S/c1-11(2)18-16(21)20-24(22,23)15-10-17-8-7-14(15)19-13-6-4-5-12(3)9-13/h4-11H,1-3H3,(H,17,19)(H2,18,20,21)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=NGBFQHCMQULJNZ-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 40148,
            "identifier": "10294",
            "identifier_type": "int",
            "name": "DNAJA2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10294",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "DnaJ (Hsp40) homolog, subfamily A, member 2"
            },
            "metanode": "Gene"
        }
    ]
}