Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=4075

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=4100",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=4050",
    "results": [
        {
            "id": 4060,
            "identifier": "948",
            "identifier_type": "int",
            "name": "CD36",
            "properties": {
                "url": "http://identifiers.org/ncbigene/948",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "CD36 molecule (thrombospondin receptor)"
            },
            "metanode": "Gene"
        },
        {
            "id": 4061,
            "identifier": "9711",
            "identifier_type": "int",
            "name": "KIAA0226",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9711",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "KIAA0226"
            },
            "metanode": "Gene"
        },
        {
            "id": 4062,
            "identifier": "C0847631",
            "identifier_type": "str",
            "name": "Dry scalp",
            "properties": {
                "url": "http://identifiers.org/umls/C0847631",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 4063,
            "identifier": "83851",
            "identifier_type": "int",
            "name": "SYT16",
            "properties": {
                "url": "http://identifiers.org/ncbigene/83851",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "synaptotagmin XVI"
            },
            "metanode": "Gene"
        },
        {
            "id": 4064,
            "identifier": "342897",
            "identifier_type": "int",
            "name": "NCCRP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/342897",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)"
            },
            "metanode": "Gene"
        },
        {
            "id": 4065,
            "identifier": "105372844",
            "identifier_type": "int",
            "name": "LOC105372844",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105372844",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "vegetative cell wall protein gp1-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 4066,
            "identifier": "5998",
            "identifier_type": "int",
            "name": "RGS3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5998",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "regulator of G-protein signaling 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 4067,
            "identifier": "10393",
            "identifier_type": "int",
            "name": "ANAPC10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10393",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "anaphase promoting complex subunit 10"
            },
            "metanode": "Gene"
        },
        {
            "id": 4068,
            "identifier": "C0018808",
            "identifier_type": "str",
            "name": "Cardiac murmur",
            "properties": {
                "url": "http://identifiers.org/umls/C0018808",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 4069,
            "identifier": "GO:0061582",
            "identifier_type": "str",
            "name": "intestinal epithelial cell migration",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0061582",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4070,
            "identifier": "GO:0060058",
            "identifier_type": "str",
            "name": "positive regulation of apoptotic process involved in mammary gland involution",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060058",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4071,
            "identifier": "GO:0004623",
            "identifier_type": "str",
            "name": "phospholipase A2 activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004623",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 4072,
            "identifier": "C0425669",
            "identifier_type": "str",
            "name": "Abdominal aortic bruit",
            "properties": {
                "url": "http://identifiers.org/umls/C0425669",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 4073,
            "identifier": "GO:0090598",
            "identifier_type": "str",
            "name": "male anatomical structure morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090598",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4074,
            "identifier": "GO:0060947",
            "identifier_type": "str",
            "name": "cardiac vascular smooth muscle cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060947",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4075,
            "identifier": "105371192",
            "identifier_type": "int",
            "name": "LOC105371192",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105371192",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "uncharacterized LOC105371192"
            },
            "metanode": "Gene"
        },
        {
            "id": 4076,
            "identifier": "C0086525",
            "identifier_type": "str",
            "name": "Lassitude",
            "properties": {
                "url": "http://identifiers.org/umls/C0086525",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 4077,
            "identifier": "GO:0005851",
            "identifier_type": "str",
            "name": "eukaryotic translation initiation factor 2B complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005851",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 4078,
            "identifier": "N0000175635",
            "identifier_type": "str",
            "name": "Factor Xa Inhibitors",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000175635",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 4079,
            "identifier": "DB01076",
            "identifier_type": "str",
            "name": "Atorvastatin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01076",
                "inchi": "InChI=1/C33H35FN2O5/c1-21(2)31-30(33(41)35-25-11-7-4-8-12-25)29(22-9-5-3-6-10-22)32(23-13-15-24(34)16-14-23)36(31)18-17-26(37)19-27(38)20-28(39)40/h3-16,21,26-27,37-38H,17-20H2,1-2H3,(H,35,41)(H,39,40)/p-1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=XUKUURHRXDUEBC-UHFFFAOYNA-M"
            },
            "metanode": "Compound"
        },
        {
            "id": 4080,
            "identifier": "DB00464",
            "identifier_type": "str",
            "name": "Sodium Tetradecyl Sulfate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00464",
                "inchi": "InChI=1S/C14H30O4S/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-18-19(15,16)17/h2-14H2,1H3,(H,15,16,17)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=URLJMZWTXZTZRR-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 4081,
            "identifier": "DB00148",
            "identifier_type": "str",
            "name": "Creatine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00148",
                "inchi": "InChI=1S/C4H9N3O2/c1-7(4(5)6)2-3(8)9/h2H2,1H3,(H3,5,6)(H,8,9)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=CVSVTCORWBXHQV-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 4082,
            "identifier": "GO:0048842",
            "identifier_type": "str",
            "name": "positive regulation of axon extension involved in axon guidance",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048842",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4083,
            "identifier": "1512",
            "identifier_type": "int",
            "name": "CTSH",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1512",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "cathepsin H"
            },
            "metanode": "Gene"
        },
        {
            "id": 4084,
            "identifier": "10019",
            "identifier_type": "int",
            "name": "SH2B3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10019",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "SH2B adaptor protein 3"
            },
            "metanode": "Gene"
        }
    ]
}