Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=40950

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=40975",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=40925",
    "results": [
        {
            "id": 40947,
            "identifier": "132884",
            "identifier_type": "int",
            "name": "EVC2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/132884",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "Ellis van Creveld syndrome 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 40948,
            "identifier": "55631",
            "identifier_type": "int",
            "name": "LRRC40",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55631",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "leucine rich repeat containing 40"
            },
            "metanode": "Gene"
        },
        {
            "id": 40949,
            "identifier": "PC7_1131",
            "identifier_type": "str",
            "name": "APC/C:Cdc20 mediated degradation of mitotic proteins",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 40950,
            "identifier": "79036",
            "identifier_type": "int",
            "name": "KXD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79036",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "KxDL motif containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 40951,
            "identifier": "8932",
            "identifier_type": "int",
            "name": "MBD2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8932",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "methyl-CpG binding domain protein 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 40952,
            "identifier": "81617",
            "identifier_type": "int",
            "name": "CAB39L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/81617",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "calcium binding protein 39-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 40953,
            "identifier": "PC7_2703",
            "identifier_type": "str",
            "name": "Creatine metabolism",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 40954,
            "identifier": "GO:0090402",
            "identifier_type": "str",
            "name": "oncogene-induced cell senescence",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090402",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40955,
            "identifier": "C0151463",
            "identifier_type": "str",
            "name": "Breast abscess",
            "properties": {
                "url": "http://identifiers.org/umls/C0151463",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 40956,
            "identifier": "2766",
            "identifier_type": "int",
            "name": "GMPR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2766",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "guanosine monophosphate reductase"
            },
            "metanode": "Gene"
        },
        {
            "id": 40957,
            "identifier": "C0743575",
            "identifier_type": "str",
            "name": "Oesophageal irritation",
            "properties": {
                "url": "http://identifiers.org/umls/C0743575",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 40958,
            "identifier": "79990",
            "identifier_type": "int",
            "name": "PLEKHH3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79990",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "pleckstrin homology domain containing, family H (with MyTH4 domain) member 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 40959,
            "identifier": "DB00104",
            "identifier_type": "str",
            "name": "Octreotide",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00104",
                "inchi": "InChI=1S/C49H66N10O10S2/c1-28(61)39(25-60)56-48(68)41-27-71-70-26-40(57-43(63)34(51)21-30-13-5-3-6-14-30)47(67)54-37(22-31-15-7-4-8-16-31)45(65)55-38(23-32-24-52-35-18-10-9-17-33(32)35)46(66)53-36(19-11-12-20-50)44(64)59-42(29(2)62)49(69)58-41/h3-10,13-18,24,28-29,34,36-42,52,60-62H,11-12,19-23,25-27,50-51H2,1-2H3,(H,53,66)(H,54,67)(H,55,65)(H,56,68)(H,57,63)(H,58,69)(H,59,64)/t28-,29?,34-,36+,37+,38-,39-,40+,41+,42+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=DEQANNDTNATYII-RRCPSWKPSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 40960,
            "identifier": "GO:2001034",
            "identifier_type": "str",
            "name": "positive regulation of double-strand break repair via nonhomologous end joining",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2001034",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40961,
            "identifier": "79133",
            "identifier_type": "int",
            "name": "NDUFAF5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79133",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "NADH dehydrogenase (ubiquinone) complex I, assembly factor 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 40962,
            "identifier": "GO:0070522",
            "identifier_type": "str",
            "name": "ERCC4-ERCC1 complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070522",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 40963,
            "identifier": "C0232201",
            "identifier_type": "str",
            "name": "Sinus rhythm",
            "properties": {
                "url": "http://identifiers.org/umls/C0232201",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 40964,
            "identifier": "221264",
            "identifier_type": "int",
            "name": "AK9",
            "properties": {
                "url": "http://identifiers.org/ncbigene/221264",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "adenylate kinase 9"
            },
            "metanode": "Gene"
        },
        {
            "id": 40965,
            "identifier": "GO:0051425",
            "identifier_type": "str",
            "name": "PTB domain binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051425",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 40966,
            "identifier": "GO:0090336",
            "identifier_type": "str",
            "name": "positive regulation of brown fat cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090336",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40967,
            "identifier": "D013651",
            "identifier_type": "str",
            "name": "Taste Disorders",
            "properties": {
                "url": "http://identifiers.org/mesh/D013651",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 40968,
            "identifier": "339291",
            "identifier_type": "int",
            "name": "LRRC30",
            "properties": {
                "url": "http://identifiers.org/ncbigene/339291",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "leucine rich repeat containing 30"
            },
            "metanode": "Gene"
        },
        {
            "id": 41071,
            "identifier": "GO:0034111",
            "identifier_type": "str",
            "name": "negative regulation of homotypic cell-cell adhesion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034111",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 40969,
            "identifier": "105369238",
            "identifier_type": "int",
            "name": "LOC105369238",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105369238",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "synaptic vesicle 2-related protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 40970,
            "identifier": "GO:0050968",
            "identifier_type": "str",
            "name": "detection of chemical stimulus involved in sensory perception of pain",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050968",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}