Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=41125

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=41150",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=41100",
    "results": [
        {
            "id": 41122,
            "identifier": "DB00267",
            "identifier_type": "str",
            "name": "Cefmenoxime",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00267",
                "inchi": "InChI=1S/C16H17N9O5S3/c1-24-16(20-22-23-24)33-4-6-3-31-13-9(12(27)25(13)10(6)14(28)29)19-11(26)8(21-30-2)7-5-32-15(17)18-7/h5,9,13H,3-4H2,1-2H3,(H2,17,18)(H,19,26)(H,28,29)/b21-8-/t9-,13-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HJJDBAOLQAWBMH-YCRCPZNHSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 41123,
            "identifier": "C0151904",
            "identifier_type": "str",
            "name": "Aspartate aminotransferase increased",
            "properties": {
                "url": "http://identifiers.org/umls/C0151904",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 41124,
            "identifier": "GO:0031053",
            "identifier_type": "str",
            "name": "primary miRNA processing",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031053",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41125,
            "identifier": "9953",
            "identifier_type": "int",
            "name": "HS3ST3B1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9953",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1"
            },
            "metanode": "Gene"
        },
        {
            "id": 41126,
            "identifier": "256076",
            "identifier_type": "int",
            "name": "COL6A5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/256076",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "collagen, type VI, alpha 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 41127,
            "identifier": "3787",
            "identifier_type": "int",
            "name": "KCNS1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3787",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "potassium voltage-gated channel, modifier subfamily S, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 41128,
            "identifier": "UBERON:0001464",
            "identifier_type": "str",
            "name": "hip",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0001464",
                "bto_id": "BTO:0001457",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D006615"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 41129,
            "identifier": "GO:0046110",
            "identifier_type": "str",
            "name": "xanthine metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046110",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41130,
            "identifier": "105373102",
            "identifier_type": "int",
            "name": "LOC105373102",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105373102",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "uncharacterized LOC105373102"
            },
            "metanode": "Gene"
        },
        {
            "id": 41131,
            "identifier": "10651",
            "identifier_type": "int",
            "name": "MTX2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10651",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "metaxin 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 41132,
            "identifier": "60673",
            "identifier_type": "int",
            "name": "ATG101",
            "properties": {
                "url": "http://identifiers.org/ncbigene/60673",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "autophagy related 101"
            },
            "metanode": "Gene"
        },
        {
            "id": 41133,
            "identifier": "PC7_2034",
            "identifier_type": "str",
            "name": "Base-free sugar-phosphate removal via the single-nucleotide replacement pathway",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 41134,
            "identifier": "GO:0017040",
            "identifier_type": "str",
            "name": "ceramidase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0017040",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 41135,
            "identifier": "DB00628",
            "identifier_type": "str",
            "name": "Clorazepate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00628",
                "inchi": "InChI=1S/C16H11ClN2O3/c17-10-6-7-12-11(8-10)13(9-4-2-1-3-5-9)19-14(16(21)22)15(20)18-12/h1-8,14H,(H,18,20)(H,21,22)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=XDDJGVMJFWAHJX-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 41136,
            "identifier": "GO:0070346",
            "identifier_type": "str",
            "name": "positive regulation of fat cell proliferation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070346",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41137,
            "identifier": "3933",
            "identifier_type": "int",
            "name": "LCN1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3933",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "lipocalin 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 41138,
            "identifier": "GO:0047372",
            "identifier_type": "str",
            "name": "acylglycerol lipase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0047372",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 41139,
            "identifier": "N0000175761",
            "identifier_type": "str",
            "name": "Monoamine Oxidase-B Inhibitors",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000175761",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 41140,
            "identifier": "GO:0090155",
            "identifier_type": "str",
            "name": "negative regulation of sphingolipid biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090155",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41141,
            "identifier": "100509620",
            "identifier_type": "int",
            "name": "LOC100509620",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100509620",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "putative aquaporin-7-like protein 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 41142,
            "identifier": "100288695",
            "identifier_type": "int",
            "name": "LIMS3L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100288695",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "LIM and senescent cell antigen-like domains 3-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 41143,
            "identifier": "6938",
            "identifier_type": "int",
            "name": "TCF12",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6938",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "transcription factor 12"
            },
            "metanode": "Gene"
        },
        {
            "id": 41144,
            "identifier": "GO:0090398",
            "identifier_type": "str",
            "name": "cellular senescence",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090398",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41145,
            "identifier": "PC7_5051",
            "identifier_type": "str",
            "name": "MAP kinase activation in TLR cascade",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 41146,
            "identifier": "118490",
            "identifier_type": "int",
            "name": "MSS51",
            "properties": {
                "url": "http://identifiers.org/ncbigene/118490",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "MSS51 mitochondrial translational activator"
            },
            "metanode": "Gene"
        }
    ]
}