Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=41375

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=41400",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=41350",
    "results": [
        {
            "id": 41372,
            "identifier": "GO:0045836",
            "identifier_type": "str",
            "name": "positive regulation of meiotic nuclear division",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045836",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41373,
            "identifier": "84765",
            "identifier_type": "int",
            "name": "ZNF577",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84765",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 577"
            },
            "metanode": "Gene"
        },
        {
            "id": 41374,
            "identifier": "56934",
            "identifier_type": "int",
            "name": "CA10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56934",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "carbonic anhydrase X"
            },
            "metanode": "Gene"
        },
        {
            "id": 41375,
            "identifier": "GO:1900745",
            "identifier_type": "str",
            "name": "positive regulation of p38MAPK cascade",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1900745",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41376,
            "identifier": "GO:0004346",
            "identifier_type": "str",
            "name": "glucose-6-phosphatase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004346",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 41377,
            "identifier": "1600",
            "identifier_type": "int",
            "name": "DAB1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1600",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "Dab, reelin signal transducer, homolog 1 (Drosophila)"
            },
            "metanode": "Gene"
        },
        {
            "id": 41378,
            "identifier": "10235",
            "identifier_type": "int",
            "name": "RASGRP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10235",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "RAS guanyl releasing protein 2 (calcium and DAG-regulated)"
            },
            "metanode": "Gene"
        },
        {
            "id": 41379,
            "identifier": "N0000175516",
            "identifier_type": "str",
            "name": "RNA Synthetase Inhibitors",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000175516",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 41380,
            "identifier": "PC7_5781",
            "identifier_type": "str",
            "name": "NOSIP mediated eNOS trafficking",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 41381,
            "identifier": "N0000175547",
            "identifier_type": "str",
            "name": "Reduction Activity",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000175547",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 41382,
            "identifier": "C0149721",
            "identifier_type": "str",
            "name": "Left ventricular hypertrophy",
            "properties": {
                "url": "http://identifiers.org/umls/C0149721",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 41383,
            "identifier": "GO:0001306",
            "identifier_type": "str",
            "name": "age-dependent response to oxidative stress",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001306",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41384,
            "identifier": "101060581",
            "identifier_type": "int",
            "name": "LOC101060581",
            "properties": {
                "url": "http://identifiers.org/ncbigene/101060581",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 41385,
            "identifier": "8464",
            "identifier_type": "int",
            "name": "SUPT3H",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8464",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "suppressor of Ty 3 homolog (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 41386,
            "identifier": "DB00705",
            "identifier_type": "str",
            "name": "Delavirdine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00705",
                "inchi": "InChI=1S/C22H28N6O3S/c1-15(2)24-19-5-4-8-23-21(19)27-9-11-28(12-10-27)22(29)20-14-16-13-17(26-32(3,30)31)6-7-18(16)25-20/h4-8,13-15,24-26H,9-12H2,1-3H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WHBIGIKBNXZKFE-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 41387,
            "identifier": "GO:0090049",
            "identifier_type": "str",
            "name": "regulation of cell migration involved in sprouting angiogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090049",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41388,
            "identifier": "474381",
            "identifier_type": "int",
            "name": "H2AFB2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/474381",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "H2A histone family, member B2"
            },
            "metanode": "Gene"
        },
        {
            "id": 41389,
            "identifier": "105373368",
            "identifier_type": "int",
            "name": "LOC105373368",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105373368",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "uncharacterized LOC105373368"
            },
            "metanode": "Gene"
        },
        {
            "id": 41390,
            "identifier": "1310",
            "identifier_type": "int",
            "name": "COL19A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1310",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "collagen, type XIX, alpha 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 41391,
            "identifier": "DB08903",
            "identifier_type": "str",
            "name": "Bedaquiline",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08903",
                "inchi": "InChI=1S/C32H31BrN2O2/c1-35(2)19-18-32(36,28-15-9-13-22-10-7-8-14-26(22)28)30(23-11-5-4-6-12-23)27-21-24-20-25(33)16-17-29(24)34-31(27)37-3/h4-17,20-21,30,36H,18-19H2,1-3H3/t30-,32-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=QUIJNHUBAXPXFS-XLJNKUFUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 41392,
            "identifier": "10933",
            "identifier_type": "int",
            "name": "MORF4L1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10933",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "mortality factor 4 like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 41393,
            "identifier": "GO:0008211",
            "identifier_type": "str",
            "name": "glucocorticoid metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008211",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41394,
            "identifier": "GO:0097066",
            "identifier_type": "str",
            "name": "response to thyroid hormone",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0097066",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41395,
            "identifier": "344892",
            "identifier_type": "int",
            "name": "RTP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/344892",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "receptor (chemosensory) transporter protein 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 41396,
            "identifier": "121053",
            "identifier_type": "int",
            "name": "C12orf45",
            "properties": {
                "url": "http://identifiers.org/ncbigene/121053",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "chromosome 12 open reading frame 45"
            },
            "metanode": "Gene"
        }
    ]
}