Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=41875

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=41900",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=41850",
    "results": [
        {
            "id": 41874,
            "identifier": "60312",
            "identifier_type": "int",
            "name": "AFAP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/60312",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "actin filament associated protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 41875,
            "identifier": "GO:0004771",
            "identifier_type": "str",
            "name": "sterol esterase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004771",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 41876,
            "identifier": "GO:0015938",
            "identifier_type": "str",
            "name": "coenzyme A catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0015938",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41877,
            "identifier": "DB00270",
            "identifier_type": "str",
            "name": "Isradipine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00270",
                "inchi": "InChI=1S/C19H21N3O5/c1-9(2)26-19(24)15-11(4)20-10(3)14(18(23)25-5)16(15)12-7-6-8-13-17(12)22-27-21-13/h6-9,16,20H,1-5H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HMJIYCCIJYRONP-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 41878,
            "identifier": "4124",
            "identifier_type": "int",
            "name": "MAN2A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4124",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "mannosidase, alpha, class 2A, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 41879,
            "identifier": "DB00997",
            "identifier_type": "str",
            "name": "Doxorubicin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00997",
                "inchi": "InChI=1S/C27H29NO11/c1-10-22(31)13(28)6-17(38-10)39-15-8-27(36,16(30)9-29)7-12-19(15)26(35)21-20(24(12)33)23(32)11-4-3-5-14(37-2)18(11)25(21)34/h3-5,10,13,15,17,22,29,31,33,35-36H,6-9,28H2,1-2H3/t10-,13-,15-,17-,22+,27-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=AOJJSUZBOXZQNB-TZSSRYMLSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 41880,
            "identifier": "GO:0002774",
            "identifier_type": "str",
            "name": "Fc receptor mediated inhibitory signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002774",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41881,
            "identifier": "339967",
            "identifier_type": "int",
            "name": "TMPRSS11A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/339967",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "transmembrane protease, serine 11A"
            },
            "metanode": "Gene"
        },
        {
            "id": 41882,
            "identifier": "117583",
            "identifier_type": "int",
            "name": "PARD3B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/117583",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "par-3 family cell polarity regulator beta"
            },
            "metanode": "Gene"
        },
        {
            "id": 41883,
            "identifier": "C0241357",
            "identifier_type": "str",
            "name": "Testosterone low",
            "properties": {
                "url": "http://identifiers.org/umls/C0241357",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 41884,
            "identifier": "C0233519",
            "identifier_type": "str",
            "name": "Suspiciousness",
            "properties": {
                "url": "http://identifiers.org/umls/C0233519",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 41885,
            "identifier": "C0151810",
            "identifier_type": "str",
            "name": "Lack of drug effect",
            "properties": {
                "url": "http://identifiers.org/umls/C0151810",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 41886,
            "identifier": "PC7_3417",
            "identifier_type": "str",
            "name": "EPHA forward signaling",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 41887,
            "identifier": "DB00209",
            "identifier_type": "str",
            "name": "Trospium",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00209",
                "inchi": "InChI=1S/C25H30NO3/c27-24(25(28,19-9-3-1-4-10-19)20-11-5-2-6-12-20)29-23-17-21-13-14-22(18-23)26(21)15-7-8-16-26/h1-6,9-12,21-23,28H,7-8,13-18H2/q+1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OYYDSUSKLWTMMQ-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 41888,
            "identifier": "C0240204",
            "identifier_type": "str",
            "name": "Paresthesia lips",
            "properties": {
                "url": "http://identifiers.org/umls/C0240204",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 41889,
            "identifier": "GO:0006757",
            "identifier_type": "str",
            "name": "ATP generation from ADP",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006757",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41890,
            "identifier": "3750",
            "identifier_type": "int",
            "name": "KCND1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3750",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "potassium channel, voltage gated Shal related subfamily D, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 41891,
            "identifier": "GO:0060419",
            "identifier_type": "str",
            "name": "heart growth",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060419",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41892,
            "identifier": "C0427108",
            "identifier_type": "str",
            "name": "Unsteadiness",
            "properties": {
                "url": "http://identifiers.org/umls/C0427108",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 41893,
            "identifier": "283989",
            "identifier_type": "int",
            "name": "TSEN54",
            "properties": {
                "url": "http://identifiers.org/ncbigene/283989",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "TSEN54 tRNA splicing endonuclease subunit"
            },
            "metanode": "Gene"
        },
        {
            "id": 41894,
            "identifier": "2107",
            "identifier_type": "int",
            "name": "ETF1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2107",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "eukaryotic translation termination factor 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 41895,
            "identifier": "10870",
            "identifier_type": "int",
            "name": "HCST",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10870",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "hematopoietic cell signal transducer"
            },
            "metanode": "Gene"
        },
        {
            "id": 41896,
            "identifier": "GO:0051897",
            "identifier_type": "str",
            "name": "positive regulation of protein kinase B signaling",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051897",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41897,
            "identifier": "GO:0050931",
            "identifier_type": "str",
            "name": "pigment cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050931",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 41898,
            "identifier": "2637",
            "identifier_type": "int",
            "name": "GBX2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2637",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "gastrulation brain homeobox 2"
            },
            "metanode": "Gene"
        }
    ]
}