Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=42000

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42025",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=41975",
    "results": [
        {
            "id": 41999,
            "identifier": "GO:0002031",
            "identifier_type": "str",
            "name": "G-protein coupled receptor internalization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002031",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42000,
            "identifier": "C0683416",
            "identifier_type": "str",
            "name": "Depersonalization syndrome",
            "properties": {
                "url": "http://identifiers.org/umls/C0683416",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42001,
            "identifier": "127343",
            "identifier_type": "int",
            "name": "DMBX1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/127343",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "diencephalon/mesencephalon homeobox 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42002,
            "identifier": "3883",
            "identifier_type": "int",
            "name": "KRT33A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3883",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "keratin 33A, type I"
            },
            "metanode": "Gene"
        },
        {
            "id": 42003,
            "identifier": "8550",
            "identifier_type": "int",
            "name": "MAPKAPK5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8550",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "mitogen-activated protein kinase-activated protein kinase 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 42004,
            "identifier": "646643",
            "identifier_type": "int",
            "name": "SBK2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/646643",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "SH3 domain binding kinase family, member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 42005,
            "identifier": "GO:0031544",
            "identifier_type": "str",
            "name": "peptidyl-proline 3-dioxygenase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031544",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 42006,
            "identifier": "727832",
            "identifier_type": "int",
            "name": "GOLGA6L6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/727832",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "golgin A6 family-like 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 42007,
            "identifier": "GO:1901671",
            "identifier_type": "str",
            "name": "positive regulation of superoxide dismutase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1901671",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42008,
            "identifier": "253582",
            "identifier_type": "int",
            "name": "TMEM244",
            "properties": {
                "url": "http://identifiers.org/ncbigene/253582",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "transmembrane protein 244"
            },
            "metanode": "Gene"
        },
        {
            "id": 42009,
            "identifier": "389177",
            "identifier_type": "int",
            "name": "TMEM212",
            "properties": {
                "url": "http://identifiers.org/ncbigene/389177",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "transmembrane protein 212"
            },
            "metanode": "Gene"
        },
        {
            "id": 42010,
            "identifier": "C0262494",
            "identifier_type": "str",
            "name": "Gangrenous cholecystitis",
            "properties": {
                "url": "http://identifiers.org/umls/C0262494",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42011,
            "identifier": "100534592",
            "identifier_type": "int",
            "name": "URGCP-MRPS24",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100534592",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "URGCP-MRPS24 readthrough"
            },
            "metanode": "Gene"
        },
        {
            "id": 42012,
            "identifier": "C0027707",
            "identifier_type": "str",
            "name": "Nephritis interstitial",
            "properties": {
                "url": "http://identifiers.org/umls/C0027707",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42013,
            "identifier": "GO:0016212",
            "identifier_type": "str",
            "name": "kynurenine-oxoglutarate transaminase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016212",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 42014,
            "identifier": "C0152096",
            "identifier_type": "str",
            "name": "Trisomy 18",
            "properties": {
                "url": "http://identifiers.org/umls/C0152096",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42015,
            "identifier": "GO:0033612",
            "identifier_type": "str",
            "name": "receptor serine/threonine kinase binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033612",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 42016,
            "identifier": "C0085607",
            "identifier_type": "str",
            "name": "Volume blood increased",
            "properties": {
                "url": "http://identifiers.org/umls/C0085607",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42017,
            "identifier": "4837",
            "identifier_type": "int",
            "name": "NNMT",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4837",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "nicotinamide N-methyltransferase"
            },
            "metanode": "Gene"
        },
        {
            "id": 42018,
            "identifier": "54859",
            "identifier_type": "int",
            "name": "ELP6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54859",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "elongator acetyltransferase complex subunit 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 42019,
            "identifier": "WP2035_r78536",
            "identifier_type": "str",
            "name": "FSH signaling pathway",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP2035_r78536",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 42020,
            "identifier": "DB01220",
            "identifier_type": "str",
            "name": "Rifaximin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01220",
                "inchi": "InChI=1S/C43H51N3O11/c1-19-14-16-46-28(18-19)44-32-29-30-37(50)25(7)40-31(29)41(52)43(9,57-40)55-17-15-27(54-10)22(4)39(56-26(8)47)24(6)36(49)23(5)35(48)20(2)12-11-13-21(3)42(53)45-33(34(32)46)38(30)51/h11-18,20,22-24,27,35-36,39,48-51H,1-10H3,(H,45,53)/b12-11+,17-15+,21-13-/t20-,22+,23+,24+,27-,35-,36+,39+,43-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=NZCRJKRKKOLAOJ-XRCRFVBUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42021,
            "identifier": "729528",
            "identifier_type": "int",
            "name": "PRAMEF14",
            "properties": {
                "url": "http://identifiers.org/ncbigene/729528",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "PRAME family member 14"
            },
            "metanode": "Gene"
        },
        {
            "id": 42022,
            "identifier": "400506",
            "identifier_type": "int",
            "name": "KNOP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/400506",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "lysine-rich nucleolar protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42023,
            "identifier": "C0520563",
            "identifier_type": "str",
            "name": "Toxic dilatation of intestine",
            "properties": {
                "url": "http://identifiers.org/umls/C0520563",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        }
    ]
}