Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=42425

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42450",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42400",
    "results": [
        {
            "id": 42423,
            "identifier": "GO:0016279",
            "identifier_type": "str",
            "name": "protein-lysine N-methyltransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016279",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 42424,
            "identifier": "DB00297",
            "identifier_type": "str",
            "name": "Bupivacaine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00297",
                "inchi": "InChI=1S/C18H28N2O/c1-4-5-12-20-13-7-6-11-16(20)18(21)19-17-14(2)9-8-10-15(17)3/h8-10,16H,4-7,11-13H2,1-3H3,(H,19,21)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=LEBVLXFERQHONN-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42425,
            "identifier": "DB08970",
            "identifier_type": "str",
            "name": "Fluprednidene Acetate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08970",
                "inchi": "InChI=1/C22H27FO5/c1-12-8-16-15-5-4-13-9-14(25)6-7-19(13,2)21(15,23)17(26)10-20(16,3)22(12,28)18(27)11-24/h6-7,9,15-17,24,26,28H,1,4-5,8,10-11H2,2-3H3/t15-,16-,17-,19-,20-,21-,22-/s2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=YVHXHNGGPURVOS-NQWCDGEMNA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42426,
            "identifier": "GO:0030324",
            "identifier_type": "str",
            "name": "lung development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030324",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42464,
            "identifier": "PC7_5971",
            "identifier_type": "str",
            "name": "Nonhomologous End-joining (NHEJ)",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 42427,
            "identifier": "155051",
            "identifier_type": "int",
            "name": "CRYGN",
            "properties": {
                "url": "http://identifiers.org/ncbigene/155051",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "crystallin, gamma N"
            },
            "metanode": "Gene"
        },
        {
            "id": 42428,
            "identifier": "54407",
            "identifier_type": "int",
            "name": "SLC38A2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54407",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "solute carrier family 38, member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 42429,
            "identifier": "DB01366",
            "identifier_type": "str",
            "name": "Procaterol",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01366",
                "inchi": "InChI=1S/C16H22N2O3/c1-4-12(17-9(2)3)16(21)11-5-7-13(19)15-10(11)6-8-14(20)18-15/h5-9,12,16-17,19,21H,4H2,1-3H3,(H,18,20)/t12-,16+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=FKNXQNWAXFXVNW-BLLLJJGKSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42430,
            "identifier": "84947",
            "identifier_type": "int",
            "name": "SERAC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84947",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "serine active site containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42431,
            "identifier": "GO:0046726",
            "identifier_type": "str",
            "name": "positive regulation by virus of viral protein levels in host cell",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046726",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42432,
            "identifier": "D005130",
            "identifier_type": "str",
            "name": "Eye Hemorrhage",
            "properties": {
                "url": "http://identifiers.org/mesh/D005130",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 42433,
            "identifier": "64855",
            "identifier_type": "int",
            "name": "FAM129B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64855",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "family with sequence similarity 129, member B"
            },
            "metanode": "Gene"
        },
        {
            "id": 42434,
            "identifier": "C0497365",
            "identifier_type": "str",
            "name": "Rash generalised",
            "properties": {
                "url": "http://identifiers.org/umls/C0497365",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42435,
            "identifier": "GO:0070973",
            "identifier_type": "str",
            "name": "protein localization to endoplasmic reticulum exit site",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070973",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42436,
            "identifier": "6838",
            "identifier_type": "int",
            "name": "SURF6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6838",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "surfeit 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 42437,
            "identifier": "DB01122",
            "identifier_type": "str",
            "name": "Ambenonium",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01122",
                "inchi": "InChI=1S/C28H40Cl2N4O2/c1-5-33(6-2,21-23-13-9-11-15-25(23)29)19-17-31-27(35)28(36)32-18-20-34(7-3,8-4)22-24-14-10-12-16-26(24)30/h9-16H,5-8,17-22H2,1-4H3/p+2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OMHBPUNFVFNHJK-UHFFFAOYSA-P"
            },
            "metanode": "Compound"
        },
        {
            "id": 42438,
            "identifier": "GO:0060513",
            "identifier_type": "str",
            "name": "prostatic bud formation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060513",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42439,
            "identifier": "3087",
            "identifier_type": "int",
            "name": "HHEX",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3087",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "hematopoietically expressed homeobox"
            },
            "metanode": "Gene"
        },
        {
            "id": 42440,
            "identifier": "25803",
            "identifier_type": "int",
            "name": "SPDEF",
            "properties": {
                "url": "http://identifiers.org/ncbigene/25803",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "SAM pointed domain containing ETS transcription factor"
            },
            "metanode": "Gene"
        },
        {
            "id": 42441,
            "identifier": "GO:0033687",
            "identifier_type": "str",
            "name": "osteoblast proliferation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033687",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42442,
            "identifier": "GO:0035646",
            "identifier_type": "str",
            "name": "endosome to melanosome transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0035646",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42443,
            "identifier": "GO:0090281",
            "identifier_type": "str",
            "name": "negative regulation of calcium ion import",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090281",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42444,
            "identifier": "105373984",
            "identifier_type": "int",
            "name": "LOC105373984",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105373984",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "anther-specific proline-rich protein APG-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 42445,
            "identifier": "3995",
            "identifier_type": "int",
            "name": "FADS3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3995",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "fatty acid desaturase 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 42446,
            "identifier": "8662",
            "identifier_type": "int",
            "name": "EIF3B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8662",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "eukaryotic translation initiation factor 3, subunit B"
            },
            "metanode": "Gene"
        }
    ]
}