Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=42575

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42600",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42550",
    "results": [
        {
            "id": 42573,
            "identifier": "PC7_7384",
            "identifier_type": "str",
            "name": "SUMO is conjugated to E1 (UBA2:SAE1)",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 42574,
            "identifier": "C0034634",
            "identifier_type": "str",
            "name": "Rage",
            "properties": {
                "url": "http://identifiers.org/umls/C0034634",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42575,
            "identifier": "GO:0055012",
            "identifier_type": "str",
            "name": "ventricular cardiac muscle cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0055012",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42576,
            "identifier": "GO:1903598",
            "identifier_type": "str",
            "name": "positive regulation of gap junction assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903598",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42577,
            "identifier": "C0233471",
            "identifier_type": "str",
            "name": "Flat affect",
            "properties": {
                "url": "http://identifiers.org/umls/C0233471",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42578,
            "identifier": "7551",
            "identifier_type": "int",
            "name": "ZNF3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7551",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "zinc finger protein 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 42579,
            "identifier": "C0151465",
            "identifier_type": "str",
            "name": "Renal abscess",
            "properties": {
                "url": "http://identifiers.org/umls/C0151465",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42580,
            "identifier": "GO:0045261",
            "identifier_type": "str",
            "name": "proton-transporting ATP synthase complex, catalytic core F(1)",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045261",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 42581,
            "identifier": "DB00555",
            "identifier_type": "str",
            "name": "Lamotrigine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00555",
                "inchi": "InChI=1S/C9H7Cl2N5/c10-5-3-1-2-4(6(5)11)7-8(12)14-9(13)16-15-7/h1-3H,(H4,12,13,14,16)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=PYZRQGJRPPTADH-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42582,
            "identifier": "26260",
            "identifier_type": "int",
            "name": "FBXO25",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26260",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "F-box protein 25"
            },
            "metanode": "Gene"
        },
        {
            "id": 42583,
            "identifier": "GO:0001778",
            "identifier_type": "str",
            "name": "plasma membrane repair",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001778",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42584,
            "identifier": "55930",
            "identifier_type": "int",
            "name": "MYO5C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55930",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "myosin VC"
            },
            "metanode": "Gene"
        },
        {
            "id": 42585,
            "identifier": "C1971624",
            "identifier_type": "str",
            "name": "Appetite absent",
            "properties": {
                "url": "http://identifiers.org/umls/C1971624",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42586,
            "identifier": "GO:0021869",
            "identifier_type": "str",
            "name": "forebrain ventricular zone progenitor cell division",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021869",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42587,
            "identifier": "PC7_3315",
            "identifier_type": "str",
            "name": "Dopamine Neurotransmitter Release Cycle",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 42588,
            "identifier": "9119",
            "identifier_type": "int",
            "name": "KRT75",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9119",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "keratin 75, type II"
            },
            "metanode": "Gene"
        },
        {
            "id": 42589,
            "identifier": "GO:0070934",
            "identifier_type": "str",
            "name": "CRD-mediated mRNA stabilization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070934",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42590,
            "identifier": "DB00956",
            "identifier_type": "str",
            "name": "Hydrocodone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00956",
                "inchi": "InChI=1S/C18H21NO3/c1-19-8-7-18-11-4-5-13(20)17(18)22-16-14(21-2)6-3-10(15(16)18)9-12(11)19/h3,6,11-12,17H,4-5,7-9H2,1-2H3/t11-,12+,17-,18-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=LLPOLZWFYMWNKH-CMKMFDCUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42591,
            "identifier": "3065",
            "identifier_type": "int",
            "name": "HDAC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3065",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "histone deacetylase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42592,
            "identifier": "57498",
            "identifier_type": "int",
            "name": "KIDINS220",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57498",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "kinase D-interacting substrate, 220kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 42593,
            "identifier": "C0009193",
            "identifier_type": "str",
            "name": "Coccydynia",
            "properties": {
                "url": "http://identifiers.org/umls/C0009193",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42594,
            "identifier": "C0278061",
            "identifier_type": "str",
            "name": "Mental state abnormal",
            "properties": {
                "url": "http://identifiers.org/umls/C0278061",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42595,
            "identifier": "GO:0004439",
            "identifier_type": "str",
            "name": "phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004439",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 42596,
            "identifier": "392843",
            "identifier_type": "int",
            "name": "IQCA1L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/392843",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "IQ motif containing with AAA domain 1 like"
            },
            "metanode": "Gene"
        },
        {
            "id": 42597,
            "identifier": "DB00310",
            "identifier_type": "str",
            "name": "Chlorthalidone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00310",
                "inchi": "InChI=1S/C14H11ClN2O4S/c15-11-6-5-8(7-12(11)22(16,20)21)14(19)10-4-2-1-3-9(10)13(18)17-14/h1-7,19H,(H,17,18)(H2,16,20,21)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JIVPVXMEBJLZRO-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        }
    ]
}