Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=42650

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42675",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42625",
    "results": [
        {
            "id": 42649,
            "identifier": "1500",
            "identifier_type": "int",
            "name": "CTNND1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1500",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "catenin (cadherin-associated protein), delta 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42650,
            "identifier": "10007",
            "identifier_type": "int",
            "name": "GNPDA1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10007",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "glucosamine-6-phosphate deaminase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42651,
            "identifier": "54931",
            "identifier_type": "int",
            "name": "TRMT10C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54931",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "tRNA methyltransferase 10 homolog C (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 42652,
            "identifier": "201161",
            "identifier_type": "int",
            "name": "CENPV",
            "properties": {
                "url": "http://identifiers.org/ncbigene/201161",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "centromere protein V"
            },
            "metanode": "Gene"
        },
        {
            "id": 42653,
            "identifier": "105370815",
            "identifier_type": "int",
            "name": "LOC105370815",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105370815",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "serine/arginine repetitive matrix protein 3-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 42654,
            "identifier": "DB01200",
            "identifier_type": "str",
            "name": "Bromocriptine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01200",
                "inchi": "InChI=1S/C32H40BrN5O5/c1-16(2)12-24-29(40)37-11-7-10-25(37)32(42)38(24)30(41)31(43-32,17(3)4)35-28(39)18-13-20-19-8-6-9-22-26(19)21(27(33)34-22)14-23(20)36(5)15-18/h6,8-9,13,16-18,23-25,34,42H,7,10-12,14-15H2,1-5H3,(H,35,39)/t18-,23-,24+,25+,31-,32+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OZVBMTJYIDMWIL-AYFBDAFISA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42655,
            "identifier": "3953",
            "identifier_type": "int",
            "name": "LEPR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3953",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "leptin receptor"
            },
            "metanode": "Gene"
        },
        {
            "id": 42656,
            "identifier": "3769",
            "identifier_type": "int",
            "name": "KCNJ13",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3769",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "potassium channel, inwardly rectifying subfamily J, member 13"
            },
            "metanode": "Gene"
        },
        {
            "id": 42657,
            "identifier": "N0000191273",
            "identifier_type": "str",
            "name": "UGT2B7 Inhibitors",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000191273",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 42658,
            "identifier": "GO:0035376",
            "identifier_type": "str",
            "name": "sterol import",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0035376",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42659,
            "identifier": "PC7_6797",
            "identifier_type": "str",
            "name": "RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 42660,
            "identifier": "10945",
            "identifier_type": "int",
            "name": "KDELR1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10945",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42661,
            "identifier": "GO:0010501",
            "identifier_type": "str",
            "name": "RNA secondary structure unwinding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010501",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42662,
            "identifier": "GO:0006487",
            "identifier_type": "str",
            "name": "protein N-linked glycosylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006487",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42663,
            "identifier": "4651",
            "identifier_type": "int",
            "name": "MYO10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4651",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "myosin X"
            },
            "metanode": "Gene"
        },
        {
            "id": 42664,
            "identifier": "GO:1901653",
            "identifier_type": "str",
            "name": "cellular response to peptide",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1901653",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42665,
            "identifier": "PC7_11610",
            "identifier_type": "str",
            "name": "formation of the beta-catenin:TCF transactivating complex",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 42666,
            "identifier": "C2718128",
            "identifier_type": "str",
            "name": "Nasal inflammation",
            "properties": {
                "url": "http://identifiers.org/umls/C2718128",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42667,
            "identifier": "GO:0007606",
            "identifier_type": "str",
            "name": "sensory perception of chemical stimulus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007606",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42668,
            "identifier": "105375092",
            "identifier_type": "int",
            "name": "LOC105375092",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105375092",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "uncharacterized LOC105375092"
            },
            "metanode": "Gene"
        },
        {
            "id": 42669,
            "identifier": "GO:0021892",
            "identifier_type": "str",
            "name": "cerebral cortex GABAergic interneuron differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021892",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42670,
            "identifier": "57142",
            "identifier_type": "int",
            "name": "RTN4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57142",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "reticulon 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 42671,
            "identifier": "GO:0046882",
            "identifier_type": "str",
            "name": "negative regulation of follicle-stimulating hormone secretion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046882",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42672,
            "identifier": "GO:0016236",
            "identifier_type": "str",
            "name": "macroautophagy",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016236",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42673,
            "identifier": "26085",
            "identifier_type": "int",
            "name": "KLK13",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26085",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "kallikrein-related peptidase 13"
            },
            "metanode": "Gene"
        }
    ]
}