Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=42725

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42750",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42700",
    "results": [
        {
            "id": 42724,
            "identifier": "57647",
            "identifier_type": "int",
            "name": "DHX37",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57647",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "DEAH (Asp-Glu-Ala-His) box polypeptide 37"
            },
            "metanode": "Gene"
        },
        {
            "id": 42725,
            "identifier": "83648",
            "identifier_type": "int",
            "name": "FAM167A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/83648",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "family with sequence similarity 167, member A"
            },
            "metanode": "Gene"
        },
        {
            "id": 42726,
            "identifier": "C0262397",
            "identifier_type": "str",
            "name": "Breast tenderness",
            "properties": {
                "url": "http://identifiers.org/umls/C0262397",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42727,
            "identifier": "80310",
            "identifier_type": "int",
            "name": "PDGFD",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80310",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "platelet derived growth factor D"
            },
            "metanode": "Gene"
        },
        {
            "id": 42728,
            "identifier": "GO:0016880",
            "identifier_type": "str",
            "name": "acid-ammonia (or amide) ligase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016880",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 42729,
            "identifier": "29800",
            "identifier_type": "int",
            "name": "ZDHHC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/29800",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "zinc finger, DHHC-type containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42730,
            "identifier": "5539",
            "identifier_type": "int",
            "name": "PPY",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5539",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "pancreatic polypeptide"
            },
            "metanode": "Gene"
        },
        {
            "id": 42731,
            "identifier": "51465",
            "identifier_type": "int",
            "name": "UBE2J1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51465",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "ubiquitin-conjugating enzyme E2, J1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42732,
            "identifier": "DB00827",
            "identifier_type": "str",
            "name": "Cinoxacin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00827",
                "inchi": "InChI=1S/C12H10N2O5/c1-2-14-7-4-9-8(18-5-19-9)3-6(7)11(15)10(13-14)12(16)17/h3-4H,2,5H2,1H3,(H,16,17)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VDUWPHTZYNWKRN-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42733,
            "identifier": "C0742339",
            "identifier_type": "str",
            "name": "Chest heaviness",
            "properties": {
                "url": "http://identifiers.org/umls/C0742339",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42734,
            "identifier": "GO:0000779",
            "identifier_type": "str",
            "name": "condensed chromosome, centromeric region",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000779",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 42735,
            "identifier": "GO:0045494",
            "identifier_type": "str",
            "name": "photoreceptor cell maintenance",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045494",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42736,
            "identifier": "DB01126",
            "identifier_type": "str",
            "name": "Dutasteride",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01126",
                "inchi": "InChI=1S/C27H30F6N2O2/c1-24-11-9-17-15(4-8-21-25(17,2)12-10-22(36)35-21)16(24)6-7-19(24)23(37)34-20-13-14(26(28,29)30)3-5-18(20)27(31,32)33/h3,5,10,12-13,15-17,19,21H,4,6-9,11H2,1-2H3,(H,34,37)(H,35,36)/t15-,16-,17-,19+,21+,24-,25+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JWJOTENAMICLJG-QWBYCMEYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42737,
            "identifier": "C0040425",
            "identifier_type": "str",
            "name": "Tonsillitis",
            "properties": {
                "url": "http://identifiers.org/umls/C0040425",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42738,
            "identifier": "GO:0051541",
            "identifier_type": "str",
            "name": "elastin metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051541",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42739,
            "identifier": "114902",
            "identifier_type": "int",
            "name": "C1QTNF5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/114902",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "C1q and tumor necrosis factor related protein 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 42740,
            "identifier": "GO:0019368",
            "identifier_type": "str",
            "name": "fatty acid elongation, unsaturated fatty acid",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019368",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42741,
            "identifier": "C0156279",
            "identifier_type": "str",
            "name": "Urethral syndrome",
            "properties": {
                "url": "http://identifiers.org/umls/C0156279",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42742,
            "identifier": "6493",
            "identifier_type": "int",
            "name": "SIM2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6493",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "single-minded family bHLH transcription factor 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 42743,
            "identifier": "C0023798",
            "identifier_type": "str",
            "name": "Lipoma",
            "properties": {
                "url": "http://identifiers.org/umls/C0023798",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42744,
            "identifier": "337968",
            "identifier_type": "int",
            "name": "KRTAP6-3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/337968",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "keratin associated protein 6-3"
            },
            "metanode": "Gene"
        },
        {
            "id": 42745,
            "identifier": "105376678",
            "identifier_type": "int",
            "name": "LOC105376678",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105376678",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "ovostatin-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 42746,
            "identifier": "338667",
            "identifier_type": "int",
            "name": "LOC338667",
            "properties": {
                "url": "http://identifiers.org/ncbigene/338667",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "V-set and immunoglobulin domain-containing protein 10-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 42747,
            "identifier": "132141",
            "identifier_type": "int",
            "name": "IQCF1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/132141",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "IQ motif containing F1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42748,
            "identifier": "9816",
            "identifier_type": "int",
            "name": "URB2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9816",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "URB2 ribosome biogenesis 2 homolog (S. cerevisiae)"
            },
            "metanode": "Gene"
        }
    ]
}