Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=42825

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42850",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=42800",
    "results": [
        {
            "id": 42823,
            "identifier": "GO:0034983",
            "identifier_type": "str",
            "name": "peptidyl-lysine deacetylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034983",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42824,
            "identifier": "GO:1903553",
            "identifier_type": "str",
            "name": "positive regulation of extracellular exosome assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903553",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42825,
            "identifier": "5364",
            "identifier_type": "int",
            "name": "PLXNB1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5364",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "plexin B1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42826,
            "identifier": "N0000191276",
            "identifier_type": "str",
            "name": "UGT1A4 Inhibitors",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000191276",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 42827,
            "identifier": "51290",
            "identifier_type": "int",
            "name": "ERGIC2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51290",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "ERGIC and golgi 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 42828,
            "identifier": "DB01030",
            "identifier_type": "str",
            "name": "Topotecan",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01030",
                "inchi": "InChI=1S/C23H23N3O5/c1-4-23(30)16-8-18-20-12(9-26(18)21(28)15(16)11-31-22(23)29)7-13-14(10-25(2)3)19(27)6-5-17(13)24-20/h5-8,27,30H,4,9-11H2,1-3H3/t23-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UCFGDBYHRUNTLO-QHCPKHFHSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42829,
            "identifier": "221409",
            "identifier_type": "int",
            "name": "SPATS1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/221409",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "spermatogenesis associated, serine-rich 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42830,
            "identifier": "113000",
            "identifier_type": "int",
            "name": "RPUSD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/113000",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "RNA pseudouridylate synthase domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 42831,
            "identifier": "23203",
            "identifier_type": "int",
            "name": "PMPCA",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23203",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "peptidase (mitochondrial processing) alpha"
            },
            "metanode": "Gene"
        },
        {
            "id": 42832,
            "identifier": "GO:0002762",
            "identifier_type": "str",
            "name": "negative regulation of myeloid leukocyte differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002762",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42833,
            "identifier": "84171",
            "identifier_type": "int",
            "name": "LOXL4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84171",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "lysyl oxidase-like 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 42834,
            "identifier": "DB00829",
            "identifier_type": "str",
            "name": "Diazepam",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00829",
                "inchi": "InChI=1S/C16H13ClN2O/c1-19-14-8-7-12(17)9-13(14)16(18-10-15(19)20)11-5-3-2-4-6-11/h2-9H,10H2,1H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=AAOVKJBEBIDNHE-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42835,
            "identifier": "PC7_1535",
            "identifier_type": "str",
            "name": "Activation of Kainate Receptors upon glutamate binding",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 42836,
            "identifier": "64847",
            "identifier_type": "int",
            "name": "SPATA20",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64847",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "spermatogenesis associated 20"
            },
            "metanode": "Gene"
        },
        {
            "id": 42837,
            "identifier": "C0042023",
            "identifier_type": "str",
            "name": "Pollakiuria",
            "properties": {
                "url": "http://identifiers.org/umls/C0042023",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42838,
            "identifier": "100873985",
            "identifier_type": "int",
            "name": "MED14OS",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100873985",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "MED14 opposite strand"
            },
            "metanode": "Gene"
        },
        {
            "id": 42839,
            "identifier": "GO:1902560",
            "identifier_type": "str",
            "name": "GMP reductase complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1902560",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 42840,
            "identifier": "C0014714",
            "identifier_type": "str",
            "name": "Ergot poisoning",
            "properties": {
                "url": "http://identifiers.org/umls/C0014714",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 42841,
            "identifier": "894",
            "identifier_type": "int",
            "name": "CCND2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/894",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "cyclin D2"
            },
            "metanode": "Gene"
        },
        {
            "id": 42842,
            "identifier": "GO:0090381",
            "identifier_type": "str",
            "name": "regulation of heart induction",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090381",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42843,
            "identifier": "GO:0071397",
            "identifier_type": "str",
            "name": "cellular response to cholesterol",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071397",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42844,
            "identifier": "GO:0010801",
            "identifier_type": "str",
            "name": "negative regulation of peptidyl-threonine phosphorylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010801",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42845,
            "identifier": "GO:0021693",
            "identifier_type": "str",
            "name": "cerebellar Purkinje cell layer structural organization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021693",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 42846,
            "identifier": "DB04839",
            "identifier_type": "str",
            "name": "Cyproterone acetate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB04839",
                "inchi": "InChI=1/C24H29ClO4/c1-12(26)24(29-13(2)27)8-6-16-14-10-20(25)19-11-21(28)15-9-18(15)23(19,4)17(14)5-7-22(16,24)3/h10-11,14-18H,5-9H2,1-4H3/t14-,15+,16-,17-,18-,22-,23-,24-/s2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UWFYSQMTEOIJJG-HEULQOMWNA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 42847,
            "identifier": "3219",
            "identifier_type": "int",
            "name": "HOXB9",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3219",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "homeobox B9"
            },
            "metanode": "Gene"
        }
    ]
}