Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=4375

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=4400",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=4350",
    "results": [
        {
            "id": 4360,
            "identifier": "6351",
            "identifier_type": "int",
            "name": "CCL4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6351",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "chemokine (C-C motif) ligand 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 4361,
            "identifier": "408186",
            "identifier_type": "int",
            "name": "OVOS",
            "properties": {
                "url": "http://identifiers.org/ncbigene/408186",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "ovostatin"
            },
            "metanode": "Gene"
        },
        {
            "id": 4362,
            "identifier": "56245",
            "identifier_type": "int",
            "name": "C21orf62",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56245",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "chromosome 21 open reading frame 62"
            },
            "metanode": "Gene"
        },
        {
            "id": 4363,
            "identifier": "GO:0010171",
            "identifier_type": "str",
            "name": "body morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010171",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4364,
            "identifier": "348801",
            "identifier_type": "int",
            "name": "LNP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/348801",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "leukemia NUP98 fusion partner 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4365,
            "identifier": "102724668",
            "identifier_type": "int",
            "name": "LOC102724668",
            "properties": {
                "url": "http://identifiers.org/ncbigene/102724668",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "probable C-mannosyltransferase DPY19L1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4366,
            "identifier": "C2609096",
            "identifier_type": "str",
            "name": "Genital hypoaesthesia",
            "properties": {
                "url": "http://identifiers.org/umls/C2609096",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 4367,
            "identifier": "79778",
            "identifier_type": "int",
            "name": "MICALL2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79778",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "MICAL-like 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 4368,
            "identifier": "DB00713",
            "identifier_type": "str",
            "name": "Oxacillin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00713",
                "inchi": "InChI=1S/C19H19N3O5S/c1-9-11(12(21-27-9)10-7-5-4-6-8-10)15(23)20-13-16(24)22-14(18(25)26)19(2,3)28-17(13)22/h4-8,13-14,17H,1-3H3,(H,20,23)(H,25,26)/t13-,14+,17-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UWYHMGVUTGAWSP-JKIFEVAISA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 4369,
            "identifier": "125704",
            "identifier_type": "int",
            "name": "FAM69C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/125704",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "family with sequence similarity 69, member C"
            },
            "metanode": "Gene"
        },
        {
            "id": 4370,
            "identifier": "GO:2000192",
            "identifier_type": "str",
            "name": "negative regulation of fatty acid transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000192",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4371,
            "identifier": "GO:0035609",
            "identifier_type": "str",
            "name": "C-terminal protein deglutamylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0035609",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4372,
            "identifier": "79807",
            "identifier_type": "int",
            "name": "GSTCD",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79807",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "glutathione S-transferase, C-terminal domain containing"
            },
            "metanode": "Gene"
        },
        {
            "id": 4373,
            "identifier": "9674",
            "identifier_type": "int",
            "name": "KIAA0040",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9674",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "KIAA0040"
            },
            "metanode": "Gene"
        },
        {
            "id": 4374,
            "identifier": "GO:0001556",
            "identifier_type": "str",
            "name": "oocyte maturation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001556",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4375,
            "identifier": "GO:0015464",
            "identifier_type": "str",
            "name": "acetylcholine receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0015464",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 4376,
            "identifier": "150094",
            "identifier_type": "int",
            "name": "SIK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/150094",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "salt-inducible kinase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4377,
            "identifier": "143630",
            "identifier_type": "int",
            "name": "UBQLNL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/143630",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "ubiquilin-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 4378,
            "identifier": "C0271650",
            "identifier_type": "str",
            "name": "Glucose tolerance impaired",
            "properties": {
                "url": "http://identifiers.org/umls/C0271650",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 4379,
            "identifier": "GO:1903273",
            "identifier_type": "str",
            "name": "regulation of sodium ion export",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903273",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4380,
            "identifier": "GO:0002719",
            "identifier_type": "str",
            "name": "negative regulation of cytokine production involved in immune response",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002719",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4381,
            "identifier": "DB01238",
            "identifier_type": "str",
            "name": "Aripiprazole",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01238",
                "inchi": "InChI=1S/C23H27Cl2N3O2/c24-19-4-3-5-21(23(19)25)28-13-11-27(12-14-28)10-1-2-15-30-18-8-6-17-7-9-22(29)26-20(17)16-18/h3-6,8,16H,1-2,7,9-15H2,(H,26,29)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=CEUORZQYGODEFX-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 4382,
            "identifier": "29982",
            "identifier_type": "int",
            "name": "NRBF2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/29982",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "nuclear receptor binding factor 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 4383,
            "identifier": "PC7_7040",
            "identifier_type": "str",
            "name": "S1P1 pathway",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 4384,
            "identifier": "375757",
            "identifier_type": "int",
            "name": "SWI5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/375757",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "SWI5 recombination repair homolog (yeast)"
            },
            "metanode": "Gene"
        }
    ]
}