Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=44950
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=44975", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=44925", "results": [ { "id": 44950, "identifier": "55634", "identifier_type": "int", "name": "KRBOX4", "properties": { "url": "http://identifiers.org/ncbigene/55634", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "X", "description": "KRAB box domain containing 4" }, "metanode": "Gene" }, { "id": 44951, "identifier": "386677", "identifier_type": "int", "name": "KRTAP10-1", "properties": { "url": "http://identifiers.org/ncbigene/386677", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "21", "description": "keratin associated protein 10-1" }, "metanode": "Gene" }, { "id": 44952, "identifier": "154075", "identifier_type": "int", "name": "SAMD3", "properties": { "url": "http://identifiers.org/ncbigene/154075", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "6", "description": "sterile alpha motif domain containing 3" }, "metanode": "Gene" }, { "id": 44953, "identifier": "GO:0072536", "identifier_type": "str", "name": "interleukin-23 receptor complex", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0072536", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 44954, "identifier": "DB01303", "identifier_type": "str", "name": "Oxtriphylline", "properties": { "url": "http://www.drugbank.ca/drugs/DB01303", "inchi": "InChI=1S/C7H8N4O2.C5H14NO/c1-10-5-4(8-3-9-5)6(12)11(2)7(10)13;1-6(2,3)4-5-7/h3H,1-2H3,(H,8,9,12);7H,4-5H2,1-3H3/q;+1/p-1", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=RLANKEDHRWMNRO-UHFFFAOYSA-M" }, "metanode": "Compound" }, { "id": 44955, "identifier": "GO:1904730", "identifier_type": "str", "name": "negative regulation of intestinal lipid absorption", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1904730", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 44956, "identifier": "55884", "identifier_type": "int", "name": "WSB2", "properties": { "url": "http://identifiers.org/ncbigene/55884", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "12", "description": "WD repeat and SOCS box containing 2" }, "metanode": "Gene" }, { "id": 44957, "identifier": "UBERON:0001679", "identifier_type": "str", "name": "ethmoid bone", "properties": { "url": "http://purl.obolibrary.org/obo/UBERON_0001679", "bto_id": "BTO:0004140", "source": "Uberon", "license": "CC BY 3.0", "mesh_id": "D005004" }, "metanode": "Anatomy" }, { "id": 44958, "identifier": "DB00203", "identifier_type": "str", "name": "Sildenafil", "properties": { "url": "http://www.drugbank.ca/drugs/DB00203", "inchi": "InChI=1S/C22H30N6O4S/c1-5-7-17-19-20(27(4)25-17)22(29)24-21(23-19)16-14-15(8-9-18(16)32-6-2)33(30,31)28-12-10-26(3)11-13-28/h8-9,14H,5-7,10-13H2,1-4H3,(H,23,24,29)", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=BNRNXUUZRGQAQC-UHFFFAOYSA-N" }, "metanode": "Compound" }, { "id": 44959, "identifier": "105376047", "identifier_type": "int", "name": "LOC105376047", "properties": { "url": "http://identifiers.org/ncbigene/105376047", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "9", "description": "uncharacterized LOC105376047" }, "metanode": "Gene" }, { "id": 44960, "identifier": "PC7_6644", "identifier_type": "str", "name": "Proton-coupled monocarboxylate transport", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 44961, "identifier": "GO:0033004", "identifier_type": "str", "name": "negative regulation of mast cell activation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0033004", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 44962, "identifier": "438", "identifier_type": "int", "name": "ASMT", "properties": { "url": "http://identifiers.org/ncbigene/438", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "X|Y", "description": "acetylserotonin O-methyltransferase" }, "metanode": "Gene" }, { "id": 44963, "identifier": "9185", "identifier_type": "int", "name": "REPS2", "properties": { "url": "http://identifiers.org/ncbigene/9185", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "X", "description": "RALBP1 associated Eps domain containing 2" }, "metanode": "Gene" }, { "id": 44964, "identifier": "GO:0004675", "identifier_type": "str", "name": "transmembrane receptor protein serine/threonine kinase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0004675", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 44965, "identifier": "GO:0048284", "identifier_type": "str", "name": "organelle fusion", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0048284", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 44966, "identifier": "105369277", "identifier_type": "int", "name": "LOC105369277", "properties": { "url": "http://identifiers.org/ncbigene/105369277", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "16", "description": "transmembrane protein C16orf54" }, "metanode": "Gene" }, { "id": 44967, "identifier": "GO:0003998", "identifier_type": "str", "name": "acylphosphatase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0003998", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 44968, "identifier": "57580", "identifier_type": "int", "name": "PREX1", "properties": { "url": "http://identifiers.org/ncbigene/57580", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "20", "description": "phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1" }, "metanode": "Gene" }, { "id": 44969, "identifier": "80243", "identifier_type": "int", "name": "PREX2", "properties": { "url": "http://identifiers.org/ncbigene/80243", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2" }, "metanode": "Gene" }, { "id": 44970, "identifier": "GO:0016331", "identifier_type": "str", "name": "morphogenesis of embryonic epithelium", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0016331", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 44971, "identifier": "GO:0006183", "identifier_type": "str", "name": "GTP biosynthetic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0006183", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 44972, "identifier": "GO:0035912", "identifier_type": "str", "name": "dorsal aorta morphogenesis", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0035912", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 44973, "identifier": "GO:1904321", "identifier_type": "str", "name": "response to forskolin", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1904321", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 44974, "identifier": "GO:0010676", "identifier_type": "str", "name": "positive regulation of cellular carbohydrate metabolic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0010676", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" } ] }{ "count": 47031, "next": "