Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=45125

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45150",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45100",
    "results": [
        {
            "id": 45125,
            "identifier": "158809",
            "identifier_type": "int",
            "name": "MAGEB6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/158809",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "melanoma antigen family B6"
            },
            "metanode": "Gene"
        },
        {
            "id": 45126,
            "identifier": "3476",
            "identifier_type": "int",
            "name": "IGBP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3476",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "immunoglobulin (CD79A) binding protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 45127,
            "identifier": "80700",
            "identifier_type": "int",
            "name": "UBXN6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80700",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "UBX domain protein 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 45128,
            "identifier": "5929",
            "identifier_type": "int",
            "name": "RBBP5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5929",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "retinoblastoma binding protein 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 45129,
            "identifier": "GO:0007035",
            "identifier_type": "str",
            "name": "vacuolar acidification",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007035",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45130,
            "identifier": "GO:0034377",
            "identifier_type": "str",
            "name": "plasma lipoprotein particle assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034377",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45131,
            "identifier": "DB00511",
            "identifier_type": "str",
            "name": "Acetyldigitoxin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00511",
                "inchi": "InChI=1S/C43H66O14/c1-21-38(48)33(54-24(4)44)19-37(51-21)57-40-23(3)53-36(18-32(40)46)56-39-22(2)52-35(17-31(39)45)55-27-9-12-41(5)26(16-27)7-8-30-29(41)10-13-42(6)28(11-14-43(30,42)49)25-15-34(47)50-20-25/h15,21-23,26-33,35-40,45-46,48-49H,7-14,16-20H2,1-6H3/t21-,22-,23-,26-,27+,28-,29+,30-,31+,32+,33+,35+,36+,37+,38-,39-,40-,41+,42-,43+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HPMZBILYSWLILX-UMDUKNJSSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 45132,
            "identifier": "GO:0021515",
            "identifier_type": "str",
            "name": "cell differentiation in spinal cord",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021515",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45133,
            "identifier": "GO:2000851",
            "identifier_type": "str",
            "name": "positive regulation of glucocorticoid secretion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000851",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45134,
            "identifier": "4430",
            "identifier_type": "int",
            "name": "MYO1B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4430",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "myosin IB"
            },
            "metanode": "Gene"
        },
        {
            "id": 45135,
            "identifier": "GO:0034450",
            "identifier_type": "str",
            "name": "ubiquitin-ubiquitin ligase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034450",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 45136,
            "identifier": "C0007194",
            "identifier_type": "str",
            "name": "Hypertrophic cardiomyopathy",
            "properties": {
                "url": "http://identifiers.org/umls/C0007194",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 45137,
            "identifier": "GO:0004774",
            "identifier_type": "str",
            "name": "succinate-CoA ligase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004774",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 45138,
            "identifier": "GO:0021942",
            "identifier_type": "str",
            "name": "radial glia guided migration of Purkinje cell",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021942",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45139,
            "identifier": "6883",
            "identifier_type": "int",
            "name": "TAF12",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6883",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 45140,
            "identifier": "56905",
            "identifier_type": "int",
            "name": "C15orf39",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56905",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "chromosome 15 open reading frame 39"
            },
            "metanode": "Gene"
        },
        {
            "id": 45141,
            "identifier": "DB01149",
            "identifier_type": "str",
            "name": "Nefazodone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01149",
                "inchi": "InChI=1S/C25H32ClN5O2/c1-2-24-27-31(25(32)30(24)18-19-33-23-10-4-3-5-11-23)13-7-12-28-14-16-29(17-15-28)22-9-6-8-21(26)20-22/h3-6,8-11,20H,2,7,12-19H2,1H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VRBKIVRKKCLPHA-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 45142,
            "identifier": "GO:0046075",
            "identifier_type": "str",
            "name": "dTTP metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046075",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45143,
            "identifier": "GO:0060340",
            "identifier_type": "str",
            "name": "positive regulation of type I interferon-mediated signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060340",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45144,
            "identifier": "GO:0007308",
            "identifier_type": "str",
            "name": "oocyte construction",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007308",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45145,
            "identifier": "C0549229",
            "identifier_type": "str",
            "name": "Nail discomfort",
            "properties": {
                "url": "http://identifiers.org/umls/C0549229",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 45146,
            "identifier": "1459",
            "identifier_type": "int",
            "name": "CSNK2A2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1459",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "casein kinase 2, alpha prime polypeptide"
            },
            "metanode": "Gene"
        },
        {
            "id": 45147,
            "identifier": "GO:0005975",
            "identifier_type": "str",
            "name": "carbohydrate metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005975",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45148,
            "identifier": "GO:0008187",
            "identifier_type": "str",
            "name": "poly-pyrimidine tract binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008187",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 45149,
            "identifier": "GO:0022803",
            "identifier_type": "str",
            "name": "passive transmembrane transporter activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0022803",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}