Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=45200
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45225", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45175", "results": [ { "id": 45199, "identifier": "9731", "identifier_type": "int", "name": "CEP104", "properties": { "url": "http://identifiers.org/ncbigene/9731", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "centrosomal protein 104kDa" }, "metanode": "Gene" }, { "id": 45200, "identifier": "GO:0034515", "identifier_type": "str", "name": "proteasome storage granule", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0034515", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 45201, "identifier": "C0221203", "identifier_type": "str", "name": "Rash vesicular", "properties": { "url": "http://identifiers.org/umls/C0221203", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45202, "identifier": "285429", "identifier_type": "int", "name": "DCAF4L1", "properties": { "url": "http://identifiers.org/ncbigene/285429", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "4", "description": "DDB1 and CUL4 associated factor 4-like 1" }, "metanode": "Gene" }, { "id": 45203, "identifier": "7771", "identifier_type": "int", "name": "ZNF112", "properties": { "url": "http://identifiers.org/ncbigene/7771", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "zinc finger protein 112" }, "metanode": "Gene" }, { "id": 45204, "identifier": "GO:0036100", "identifier_type": "str", "name": "leukotriene catabolic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0036100", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45205, "identifier": "GO:1902018", "identifier_type": "str", "name": "negative regulation of cilium assembly", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1902018", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45206, "identifier": "GO:0001637", "identifier_type": "str", "name": "G-protein coupled chemoattractant receptor activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0001637", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 45207, "identifier": "GO:0050856", "identifier_type": "str", "name": "regulation of T cell receptor signaling pathway", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0050856", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45208, "identifier": "157680", "identifier_type": "int", "name": "VPS13B", "properties": { "url": "http://identifiers.org/ncbigene/157680", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "vacuolar protein sorting 13 homolog B (yeast)" }, "metanode": "Gene" }, { "id": 45209, "identifier": "GO:1901096", "identifier_type": "str", "name": "regulation of autophagosome maturation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1901096", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45210, "identifier": "267004", "identifier_type": "int", "name": "PGBD3", "properties": { "url": "http://identifiers.org/ncbigene/267004", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "piggyBac transposable element derived 3" }, "metanode": "Gene" }, { "id": 45211, "identifier": "164714", "identifier_type": "int", "name": "TTLL8", "properties": { "url": "http://identifiers.org/ncbigene/164714", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "22", "description": "tubulin tyrosine ligase-like family member 8" }, "metanode": "Gene" }, { "id": 45212, "identifier": "23109", "identifier_type": "int", "name": "DDN", "properties": { "url": "http://identifiers.org/ncbigene/23109", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "12", "description": "dendrin" }, "metanode": "Gene" }, { "id": 45213, "identifier": "79699", "identifier_type": "int", "name": "ZYG11B", "properties": { "url": "http://identifiers.org/ncbigene/79699", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "zyg-11 family member B, cell cycle regulator" }, "metanode": "Gene" }, { "id": 45214, "identifier": "C0007097", "identifier_type": "str", "name": "Carcinoma", "properties": { "url": "http://identifiers.org/umls/C0007097", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45215, "identifier": "832", "identifier_type": "int", "name": "CAPZB", "properties": { "url": "http://identifiers.org/ncbigene/832", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "capping protein (actin filament) muscle Z-line, beta" }, "metanode": "Gene" }, { "id": 45216, "identifier": "9467", "identifier_type": "int", "name": "SH3BP5", "properties": { "url": "http://identifiers.org/ncbigene/9467", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "3", "description": "SH3-domain binding protein 5 (BTK-associated)" }, "metanode": "Gene" }, { "id": 45217, "identifier": "UBERON:0000955", "identifier_type": "str", "name": "brain", "properties": { "url": "http://purl.obolibrary.org/obo/UBERON_0000955", "bto_id": "BTO:0000142", "source": "Uberon", "license": "CC BY 3.0", "mesh_id": "D001921" }, "metanode": "Anatomy" }, { "id": 45218, "identifier": "N0000000160", "identifier_type": "str", "name": "Cyclooxygenase Inhibitors", "properties": { "url": "http://purl.bioontology.org/ontology/NDFRT/N0000000160", "source": "FDA via DrugCentral", "license": "CC BY 4.0", "class_type": "Mechanism of Action" }, "metanode": "Pharmacologic Class" }, { "id": 45219, "identifier": "GO:0030672", "identifier_type": "str", "name": "synaptic vesicle membrane", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0030672", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 45220, "identifier": "GO:0042053", "identifier_type": "str", "name": "regulation of dopamine metabolic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0042053", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45221, "identifier": "27306", "identifier_type": "int", "name": "HPGDS", "properties": { "url": "http://identifiers.org/ncbigene/27306", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "4", "description": "hematopoietic prostaglandin D synthase" }, "metanode": "Gene" }, { "id": 45222, "identifier": "PC7_5678", "identifier_type": "str", "name": "N-glycan antennae elongation in the medial/trans-Golgi", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 45223, "identifier": "D013494", "identifier_type": "str", "name": "Supranuclear Palsy, Progressive", "properties": { "url": "http://identifiers.org/mesh/D013494", "source": "MeSH", "license": "CC0 1.0" }, "metanode": "Symptom" } ] }{ "count": 47031, "next": "