Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=45300
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45325", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45275", "results": [ { "id": 45299, "identifier": "GO:0045040", "identifier_type": "str", "name": "protein import into mitochondrial outer membrane", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0045040", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45300, "identifier": "GO:0046831", "identifier_type": "str", "name": "regulation of RNA export from nucleus", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0046831", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45301, "identifier": "GO:0002604", "identifier_type": "str", "name": "regulation of dendritic cell antigen processing and presentation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0002604", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45302, "identifier": "DB00279", "identifier_type": "str", "name": "Liothyronine", "properties": { "url": "http://www.drugbank.ca/drugs/DB00279", "inchi": "InChI=1S/C15H12I3NO4/c16-9-6-8(1-2-13(9)20)23-14-10(17)3-7(4-11(14)18)5-12(19)15(21)22/h1-4,6,12,20H,5,19H2,(H,21,22)/t12-/m0/s1", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=AUYYCJSJGJYCDS-LBPRGKRZSA-N" }, "metanode": "Compound" }, { "id": 45303, "identifier": "PC7_5985", "identifier_type": "str", "name": "Nuclear Envelope Breakdown", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 45304, "identifier": "55735", "identifier_type": "int", "name": "DNAJC11", "properties": { "url": "http://identifiers.org/ncbigene/55735", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "DnaJ (Hsp40) homolog, subfamily C, member 11" }, "metanode": "Gene" }, { "id": 45305, "identifier": "442184", "identifier_type": "int", "name": "OR2B3", "properties": { "url": "http://identifiers.org/ncbigene/442184", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "6", "description": "olfactory receptor, family 2, subfamily B, member 3" }, "metanode": "Gene" }, { "id": 45306, "identifier": "GO:0060080", "identifier_type": "str", "name": "inhibitory postsynaptic potential", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0060080", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45307, "identifier": "GO:0021532", "identifier_type": "str", "name": "neural tube patterning", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0021532", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45308, "identifier": "GO:0045275", "identifier_type": "str", "name": "respiratory chain complex III", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0045275", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 45309, "identifier": "GO:0016796", "identifier_type": "str", "name": "exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0016796", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 45310, "identifier": "100133130", "identifier_type": "int", "name": "LOC100133130", "properties": { "url": "http://identifiers.org/ncbigene/100133130", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "PRO1102" }, "metanode": "Gene" }, { "id": 45311, "identifier": "GO:0070161", "identifier_type": "str", "name": "anchoring junction", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0070161", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 45312, "identifier": "401", "identifier_type": "int", "name": "PHOX2A", "properties": { "url": "http://identifiers.org/ncbigene/401", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "11", "description": "paired-like homeobox 2a" }, "metanode": "Gene" }, { "id": 45313, "identifier": "GO:0045872", "identifier_type": "str", "name": "positive regulation of rhodopsin gene expression", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0045872", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45314, "identifier": "C0151849", "identifier_type": "str", "name": "Phosphatase alkaline increased", "properties": { "url": "http://identifiers.org/umls/C0151849", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45315, "identifier": "C0040128", "identifier_type": "str", "name": "Thyroid disorder", "properties": { "url": "http://identifiers.org/umls/C0040128", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45316, "identifier": "105369972", "identifier_type": "int", "name": "LOC105369972", "properties": { "url": "http://identifiers.org/ncbigene/105369972", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "12", "description": "endogenous retrovirus group K member 8 Pol protein-like" }, "metanode": "Gene" }, { "id": 45317, "identifier": "105378479", "identifier_type": "int", "name": "LOC105378479", "properties": { "url": "http://identifiers.org/ncbigene/105378479", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "uncharacterized LOC105378479" }, "metanode": "Gene" }, { "id": 45318, "identifier": "27131", "identifier_type": "int", "name": "SNX5", "properties": { "url": "http://identifiers.org/ncbigene/27131", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "20", "description": "sorting nexin 5" }, "metanode": "Gene" }, { "id": 45319, "identifier": "2870", "identifier_type": "int", "name": "GRK6", "properties": { "url": "http://identifiers.org/ncbigene/2870", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "5", "description": "G protein-coupled receptor kinase 6" }, "metanode": "Gene" }, { "id": 45320, "identifier": "GO:0050773", "identifier_type": "str", "name": "regulation of dendrite development", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0050773", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45321, "identifier": "GO:0071276", "identifier_type": "str", "name": "cellular response to cadmium ion", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0071276", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45322, "identifier": "C0424489", "identifier_type": "str", "name": "Chapped lips", "properties": { "url": "http://identifiers.org/umls/C0424489", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45323, "identifier": "GO:0090189", "identifier_type": "str", "name": "regulation of branching involved in ureteric bud morphogenesis", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0090189", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" } ] }{ "count": 47031, "next": "