Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=45325

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45350",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45300",
    "results": [
        {
            "id": 45324,
            "identifier": "5451",
            "identifier_type": "int",
            "name": "POU2F1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5451",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "POU class 2 homeobox 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 45325,
            "identifier": "GO:0042118",
            "identifier_type": "str",
            "name": "endothelial cell activation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042118",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45326,
            "identifier": "GO:0008523",
            "identifier_type": "str",
            "name": "sodium-dependent multivitamin transmembrane transporter activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008523",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 45327,
            "identifier": "23418",
            "identifier_type": "int",
            "name": "CRB1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23418",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "crumbs family member 1, photoreceptor morphogenesis associated"
            },
            "metanode": "Gene"
        },
        {
            "id": 45328,
            "identifier": "C0341117",
            "identifier_type": "str",
            "name": "Esophageal erosions",
            "properties": {
                "url": "http://identifiers.org/umls/C0341117",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 45329,
            "identifier": "D012891",
            "identifier_type": "str",
            "name": "Sleep Apnea Syndromes",
            "properties": {
                "url": "http://identifiers.org/mesh/D012891",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 45330,
            "identifier": "4589",
            "identifier_type": "int",
            "name": "MUC7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4589",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "mucin 7, secreted"
            },
            "metanode": "Gene"
        },
        {
            "id": 45331,
            "identifier": "DB00763",
            "identifier_type": "str",
            "name": "Methimazole",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00763",
                "inchi": "InChI=1S/C4H6N2S/c1-6-3-2-5-4(6)7/h2-3H,1H3,(H,5,7)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=PMRYVIKBURPHAH-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 45332,
            "identifier": "64806",
            "identifier_type": "int",
            "name": "IL25",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64806",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "interleukin 25"
            },
            "metanode": "Gene"
        },
        {
            "id": 45863,
            "identifier": "PC7_6191",
            "identifier_type": "str",
            "name": "PLK3 signaling events",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 45333,
            "identifier": "UBERON:0002925",
            "identifier_type": "str",
            "name": "trigeminal nucleus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0002925",
                "bto_id": "BTO:0001074",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D014278"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 45334,
            "identifier": "C0853347",
            "identifier_type": "str",
            "name": "Venous thrombosis limb",
            "properties": {
                "url": "http://identifiers.org/umls/C0853347",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 45335,
            "identifier": "GO:0002295",
            "identifier_type": "str",
            "name": "T-helper cell lineage commitment",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002295",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45336,
            "identifier": "79832",
            "identifier_type": "int",
            "name": "QSER1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79832",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "glutamine and serine rich 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 45337,
            "identifier": "C0006267",
            "identifier_type": "str",
            "name": "Bronchiectasis",
            "properties": {
                "url": "http://identifiers.org/umls/C0006267",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 45338,
            "identifier": "C3248383",
            "identifier_type": "str",
            "name": "Logorrhoea",
            "properties": {
                "url": "http://identifiers.org/umls/C3248383",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 45339,
            "identifier": "9472",
            "identifier_type": "int",
            "name": "AKAP6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9472",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "A kinase (PRKA) anchor protein 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 45340,
            "identifier": "DB00772",
            "identifier_type": "str",
            "name": "Malathion",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00772",
                "inchi": "InChI=1S/C10H19O6PS2/c1-5-15-9(11)7-8(10(12)16-6-2)19-17(18,13-3)14-4/h8H,5-7H2,1-4H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JXSJBGJIGXNWCI-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 45341,
            "identifier": "C0853762",
            "identifier_type": "str",
            "name": "Exacerbation of hot flushes",
            "properties": {
                "url": "http://identifiers.org/umls/C0853762",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 45342,
            "identifier": "84911",
            "identifier_type": "int",
            "name": "ZNF382",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84911",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 382"
            },
            "metanode": "Gene"
        },
        {
            "id": 45343,
            "identifier": "3434",
            "identifier_type": "int",
            "name": "IFIT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3434",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "interferon-induced protein with tetratricopeptide repeats 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 45344,
            "identifier": "DB08823",
            "identifier_type": "str",
            "name": "Spinosad",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08823",
                "inchi": "InChI=1S/C42H67NO9/c1-10-27-12-11-13-35(52-38-17-16-34(43(5)6)25(4)49-38)24(3)39(45)33-21-31-29(32(33)22-37(44)51-27)15-14-26-19-28(20-30(26)31)50-36-18-23(2)40(46-7)42(48-9)41(36)47-8/h14-15,21,23-32,34-36,38,40-42H,10-13,16-20,22H2,1-9H3/t23-,24-,25-,26-,27+,28-,29-,30-,31-,32+,34+,35+,36-,38+,40+,41+,42-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=SRYYCRXKYKWXDQ-PTGKCMAJSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 45345,
            "identifier": "GO:0030350",
            "identifier_type": "str",
            "name": "iron-responsive element binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030350",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 45346,
            "identifier": "GO:0030100",
            "identifier_type": "str",
            "name": "regulation of endocytosis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030100",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45347,
            "identifier": "83756",
            "identifier_type": "int",
            "name": "TAS1R3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/83756",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "taste receptor, type 1, member 3"
            },
            "metanode": "Gene"
        }
    ]
}