Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=45450
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45475", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45425", "results": [ { "id": 45448, "identifier": "GO:0007045", "identifier_type": "str", "name": "cell-substrate adherens junction assembly", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0007045", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45449, "identifier": "730291", "identifier_type": "int", "name": "ZNF735", "properties": { "url": "http://identifiers.org/ncbigene/730291", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "7", "description": "zinc finger protein 735" }, "metanode": "Gene" }, { "id": 45450, "identifier": "GO:0070542", "identifier_type": "str", "name": "response to fatty acid", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0070542", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45451, "identifier": "8818", "identifier_type": "int", "name": "DPM2", "properties": { "url": "http://identifiers.org/ncbigene/8818", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "9", "description": "dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit" }, "metanode": "Gene" }, { "id": 45452, "identifier": "84279", "identifier_type": "int", "name": "PRADC1", "properties": { "url": "http://identifiers.org/ncbigene/84279", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "protease-associated domain containing 1" }, "metanode": "Gene" }, { "id": 45453, "identifier": "6282", "identifier_type": "int", "name": "S100A11", "properties": { "url": "http://identifiers.org/ncbigene/6282", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "S100 calcium binding protein A11" }, "metanode": "Gene" }, { "id": 45454, "identifier": "PC7_6591", "identifier_type": "str", "name": "Processing of DNA double-strand break ends", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 45455, "identifier": "117144", "identifier_type": "int", "name": "CATSPER1", "properties": { "url": "http://identifiers.org/ncbigene/117144", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "11", "description": "cation channel, sperm associated 1" }, "metanode": "Gene" }, { "id": 45456, "identifier": "256979", "identifier_type": "int", "name": "SUN3", "properties": { "url": "http://identifiers.org/ncbigene/256979", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "7", "description": "Sad1 and UNC84 domain containing 3" }, "metanode": "Gene" }, { "id": 45457, "identifier": "C0003862", "identifier_type": "str", "name": "Arthralgia", "properties": { "url": "http://identifiers.org/umls/C0003862", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45458, "identifier": "147700", "identifier_type": "int", "name": "KLC3", "properties": { "url": "http://identifiers.org/ncbigene/147700", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "kinesin light chain 3" }, "metanode": "Gene" }, { "id": 45459, "identifier": "GO:0060219", "identifier_type": "str", "name": "camera-type eye photoreceptor cell differentiation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0060219", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45460, "identifier": "GO:0009790", "identifier_type": "str", "name": "embryo development", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0009790", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45461, "identifier": "51136", "identifier_type": "int", "name": "RNFT1", "properties": { "url": "http://identifiers.org/ncbigene/51136", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "17", "description": "ring finger protein, transmembrane 1" }, "metanode": "Gene" }, { "id": 45462, "identifier": "GO:0061178", "identifier_type": "str", "name": "regulation of insulin secretion involved in cellular response to glucose stimulus", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0061178", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45463, "identifier": "C0270736", "identifier_type": "str", "name": "Essential tremor", "properties": { "url": "http://identifiers.org/umls/C0270736", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45464, "identifier": "128360", "identifier_type": "int", "name": "OR10T2", "properties": { "url": "http://identifiers.org/ncbigene/128360", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "olfactory receptor, family 10, subfamily T, member 2" }, "metanode": "Gene" }, { "id": 45465, "identifier": "GO:1902908", "identifier_type": "str", "name": "regulation of melanosome transport", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1902908", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45466, "identifier": "GO:0032252", "identifier_type": "str", "name": "secretory granule localization", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0032252", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45467, "identifier": "83889", "identifier_type": "int", "name": "WDR87", "properties": { "url": "http://identifiers.org/ncbigene/83889", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "WD repeat domain 87" }, "metanode": "Gene" }, { "id": 45468, "identifier": "5908", "identifier_type": "int", "name": "RAP1B", "properties": { "url": "http://identifiers.org/ncbigene/5908", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "12", "description": "RAP1B, member of RAS oncogene family" }, "metanode": "Gene" }, { "id": 45469, "identifier": "10575", "identifier_type": "int", "name": "CCT4", "properties": { "url": "http://identifiers.org/ncbigene/10575", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "chaperonin containing TCP1, subunit 4 (delta)" }, "metanode": "Gene" }, { "id": 45470, "identifier": "GO:0043153", "identifier_type": "str", "name": "entrainment of circadian clock by photoperiod", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0043153", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45471, "identifier": "GO:0000778", "identifier_type": "str", "name": "condensed nuclear chromosome kinetochore", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0000778", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 45472, "identifier": "GO:0019530", "identifier_type": "str", "name": "taurine metabolic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0019530", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" } ] }{ "count": 47031, "next": "