Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=45675

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45700",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45650",
    "results": [
        {
            "id": 45673,
            "identifier": "PC7_5884",
            "identifier_type": "str",
            "name": "Netrin-1 signaling",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 45674,
            "identifier": "GO:0060193",
            "identifier_type": "str",
            "name": "positive regulation of lipase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060193",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45675,
            "identifier": "GO:0019373",
            "identifier_type": "str",
            "name": "epoxygenase P450 pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019373",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45676,
            "identifier": "203074",
            "identifier_type": "int",
            "name": "PRSS55",
            "properties": {
                "url": "http://identifiers.org/ncbigene/203074",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "protease, serine, 55"
            },
            "metanode": "Gene"
        },
        {
            "id": 45677,
            "identifier": "7732",
            "identifier_type": "int",
            "name": "RNF112",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7732",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "ring finger protein 112"
            },
            "metanode": "Gene"
        },
        {
            "id": 45678,
            "identifier": "GO:0003383",
            "identifier_type": "str",
            "name": "apical constriction",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003383",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45679,
            "identifier": "GO:0052593",
            "identifier_type": "str",
            "name": "tryptamine:oxygen oxidoreductase (deaminating) activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0052593",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 45680,
            "identifier": "29887",
            "identifier_type": "int",
            "name": "SNX10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/29887",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "sorting nexin 10"
            },
            "metanode": "Gene"
        },
        {
            "id": 45681,
            "identifier": "5866",
            "identifier_type": "int",
            "name": "RAB3IL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5866",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "RAB3A interacting protein (rabin3)-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 45682,
            "identifier": "10277",
            "identifier_type": "int",
            "name": "UBE4B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10277",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "ubiquitination factor E4B"
            },
            "metanode": "Gene"
        },
        {
            "id": 45683,
            "identifier": "GO:0022842",
            "identifier_type": "str",
            "name": "narrow pore channel activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0022842",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 45684,
            "identifier": "C0241712",
            "identifier_type": "str",
            "name": "Vulval erythema",
            "properties": {
                "url": "http://identifiers.org/umls/C0241712",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 45685,
            "identifier": "221927",
            "identifier_type": "int",
            "name": "BRAT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/221927",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "BRCA1-associated ATM activator 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 45686,
            "identifier": "GO:0000103",
            "identifier_type": "str",
            "name": "sulfate assimilation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000103",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45687,
            "identifier": "GO:0016653",
            "identifier_type": "str",
            "name": "oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016653",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 45688,
            "identifier": "GO:0071663",
            "identifier_type": "str",
            "name": "positive regulation of granzyme B production",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071663",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45689,
            "identifier": "23705",
            "identifier_type": "int",
            "name": "CADM1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23705",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "cell adhesion molecule 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 45690,
            "identifier": "DB00512",
            "identifier_type": "str",
            "name": "Vancomycin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00512",
                "inchi": "InChI=1S/C66H75Cl2N9O24/c1-23(2)12-34(71-5)58(88)76-49-51(83)26-7-10-38(32(67)14-26)97-40-16-28-17-41(55(40)101-65-56(54(86)53(85)42(22-78)99-65)100-44-21-66(4,70)57(87)24(3)96-44)98-39-11-8-27(15-33(39)68)52(84)50-63(93)75-48(64(94)95)31-18-29(79)19-37(81)45(31)30-13-25(6-9-36(30)80)46(60(90)77-50)74-61(91)47(28)73-59(89)35(20-43(69)82)72-62(49)92/h6-11,13-19,23-24,34-35,42,44,46-54,56-57,65,71,78-81,83-87H,12,20-22,70H2,1-5H3,(H2,69,82)(H,72,92)(H,73,89)(H,74,91)(H,75,93)(H,76,88)(H,77,90)(H,94,95)/t24-,34+,35-,42+,44-,46+,47+,48-,49+,50-,51+,52+,53+,54-,56+,57+,65-,66-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=MYPYJXKWCTUITO-LYRMYLQWSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 45691,
            "identifier": "PC7_7427",
            "identifier_type": "str",
            "name": "Separation of Sister Chromatids",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 45692,
            "identifier": "DB08998",
            "identifier_type": "str",
            "name": "Demexiptiline",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08998",
                "inchi": "InChI=1S/C18H18N2O/c1-19-12-13-21-20-18-16-8-4-2-6-14(16)10-11-15-7-3-5-9-17(15)18/h2-11,19H,12-13H2,1H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=SEDQWOMFMIJKCU-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 45693,
            "identifier": "123720",
            "identifier_type": "int",
            "name": "WHAMM",
            "properties": {
                "url": "http://identifiers.org/ncbigene/123720",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "WAS protein homolog associated with actin, golgi membranes and microtubules"
            },
            "metanode": "Gene"
        },
        {
            "id": 45694,
            "identifier": "6564",
            "identifier_type": "int",
            "name": "SLC15A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6564",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "solute carrier family 15 (oligopeptide transporter), member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 45695,
            "identifier": "102725009",
            "identifier_type": "int",
            "name": "LOC102725009",
            "properties": {
                "url": "http://identifiers.org/ncbigene/102725009",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "putative beta-glucuronidase-like protein MGC156142"
            },
            "metanode": "Gene"
        },
        {
            "id": 45696,
            "identifier": "388333",
            "identifier_type": "int",
            "name": "SPDYE4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/388333",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "speedy/RINGO cell cycle regulator family member E4"
            },
            "metanode": "Gene"
        },
        {
            "id": 45697,
            "identifier": "23387",
            "identifier_type": "int",
            "name": "SIK3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23387",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "SIK family kinase 3"
            },
            "metanode": "Gene"
        }
    ]
}