Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=45750
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45775", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45725", "results": [ { "id": 45749, "identifier": "9148", "identifier_type": "int", "name": "NEURL1", "properties": { "url": "http://identifiers.org/ncbigene/9148", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "neuralized E3 ubiquitin protein ligase 1" }, "metanode": "Gene" }, { "id": 45750, "identifier": "GO:0060235", "identifier_type": "str", "name": "lens induction in camera-type eye", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0060235", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45751, "identifier": "81833", "identifier_type": "int", "name": "SPACA1", "properties": { "url": "http://identifiers.org/ncbigene/81833", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "6", "description": "sperm acrosome associated 1" }, "metanode": "Gene" }, { "id": 45752, "identifier": "GO:0015993", "identifier_type": "str", "name": "molecular hydrogen transport", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0015993", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45753, "identifier": "C0240897", "identifier_type": "str", "name": "Retinal exudates", "properties": { "url": "http://identifiers.org/umls/C0240897", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45754, "identifier": "GO:0046456", "identifier_type": "str", "name": "icosanoid biosynthetic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0046456", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45755, "identifier": "GO:0043010", "identifier_type": "str", "name": "camera-type eye development", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0043010", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45756, "identifier": "135932", "identifier_type": "int", "name": "TMEM139", "properties": { "url": "http://identifiers.org/ncbigene/135932", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "7", "description": "transmembrane protein 139" }, "metanode": "Gene" }, { "id": 45757, "identifier": "83544", "identifier_type": "int", "name": "DNAL1", "properties": { "url": "http://identifiers.org/ncbigene/83544", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "14", "description": "dynein, axonemal, light chain 1" }, "metanode": "Gene" }, { "id": 45966, "identifier": "C1142011", "identifier_type": "str", "name": "Orchitis noninfective", "properties": { "url": "http://identifiers.org/umls/C1142011", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45758, "identifier": "GO:0032968", "identifier_type": "str", "name": "positive regulation of transcription elongation from RNA polymerase II promoter", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0032968", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45759, "identifier": "503834", "identifier_type": "int", "name": "DPRX", "properties": { "url": "http://identifiers.org/ncbigene/503834", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "divergent-paired related homeobox" }, "metanode": "Gene" }, { "id": 45760, "identifier": "GO:2000124", "identifier_type": "str", "name": "regulation of endocannabinoid signaling pathway", "properties": { "url": "http://purl.obolibrary.org/obo/GO_2000124", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45761, "identifier": "5435", "identifier_type": "int", "name": "POLR2F", "properties": { "url": "http://identifiers.org/ncbigene/5435", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "22", "description": "polymerase (RNA) II (DNA directed) polypeptide F" }, "metanode": "Gene" }, { "id": 45762, "identifier": "145270", "identifier_type": "int", "name": "PRIMA1", "properties": { "url": "http://identifiers.org/ncbigene/145270", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "14", "description": "proline rich membrane anchor 1" }, "metanode": "Gene" }, { "id": 45763, "identifier": "51361", "identifier_type": "int", "name": "HOOK1", "properties": { "url": "http://identifiers.org/ncbigene/51361", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "hook microtubule-tethering protein 1" }, "metanode": "Gene" }, { "id": 45764, "identifier": "GO:0042670", "identifier_type": "str", "name": "retinal cone cell differentiation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0042670", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45765, "identifier": "GO:0061200", "identifier_type": "str", "name": "clathrin-sculpted gamma-aminobutyric acid transport vesicle", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0061200", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 45766, "identifier": "GO:0045168", "identifier_type": "str", "name": "cell-cell signaling involved in cell fate commitment", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0045168", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45767, "identifier": "C0233514", "identifier_type": "str", "name": "Abnormal behaviour", "properties": { "url": "http://identifiers.org/umls/C0233514", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45768, "identifier": "GO:0060051", "identifier_type": "str", "name": "negative regulation of protein glycosylation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0060051", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45769, "identifier": "GO:0075732", "identifier_type": "str", "name": "viral penetration into host nucleus", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0075732", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45770, "identifier": "440295", "identifier_type": "int", "name": "GOLGA6L9", "properties": { "url": "http://identifiers.org/ncbigene/440295", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "15", "description": "golgin A6 family-like 9" }, "metanode": "Gene" }, { "id": 45771, "identifier": "114798", "identifier_type": "int", "name": "SLITRK1", "properties": { "url": "http://identifiers.org/ncbigene/114798", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "13", "description": "SLIT and NTRK-like family, member 1" }, "metanode": "Gene" }, { "id": 45772, "identifier": "6389", "identifier_type": "int", "name": "SDHA", "properties": { "url": "http://identifiers.org/ncbigene/6389", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "5", "description": "succinate dehydrogenase complex, subunit A, flavoprotein (Fp)" }, "metanode": "Gene" } ] }{ "count": 47031, "next": "