Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=45800
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45825", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45775", "results": [ { "id": 45797, "identifier": "C0854532", "identifier_type": "str", "name": "Myopericarditis", "properties": { "url": "http://identifiers.org/umls/C0854532", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45798, "identifier": "8521", "identifier_type": "int", "name": "GCM1", "properties": { "url": "http://identifiers.org/ncbigene/8521", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "6", "description": "glial cells missing homolog 1 (Drosophila)" }, "metanode": "Gene" }, { "id": 45799, "identifier": "GO:1903845", "identifier_type": "str", "name": "negative regulation of cellular response to transforming growth factor beta stimulus", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1903845", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45800, "identifier": "C1321632", "identifier_type": "str", "name": "Venous thrombosis deep limb", "properties": { "url": "http://identifiers.org/umls/C1321632", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45801, "identifier": "10990", "identifier_type": "int", "name": "LILRB5", "properties": { "url": "http://identifiers.org/ncbigene/10990", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5" }, "metanode": "Gene" }, { "id": 45802, "identifier": "57541", "identifier_type": "int", "name": "ZNF398", "properties": { "url": "http://identifiers.org/ncbigene/57541", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "7", "description": "zinc finger protein 398" }, "metanode": "Gene" }, { "id": 45803, "identifier": "GO:0016849", "identifier_type": "str", "name": "phosphorus-oxygen lyase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0016849", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 45804, "identifier": "GO:0071763", "identifier_type": "str", "name": "nuclear membrane organization", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0071763", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45805, "identifier": "645142", "identifier_type": "int", "name": "PPIAL4D", "properties": { "url": "http://identifiers.org/ncbigene/645142", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "peptidylprolyl isomerase A (cyclophilin A)-like 4D" }, "metanode": "Gene" }, { "id": 45806, "identifier": "GO:0032909", "identifier_type": "str", "name": "regulation of transforming growth factor beta2 production", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0032909", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45807, "identifier": "4808", "identifier_type": "int", "name": "NHLH2", "properties": { "url": "http://identifiers.org/ncbigene/4808", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "nescient helix loop helix 2" }, "metanode": "Gene" }, { "id": 45808, "identifier": "C0392175", "identifier_type": "str", "name": "Renal haemorrhage", "properties": { "url": "http://identifiers.org/umls/C0392175", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45809, "identifier": "729515", "identifier_type": "int", "name": "TMEM242", "properties": { "url": "http://identifiers.org/ncbigene/729515", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "6", "description": "transmembrane protein 242" }, "metanode": "Gene" }, { "id": 45810, "identifier": "GO:1903364", "identifier_type": "str", "name": "positive regulation of cellular protein catabolic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1903364", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45811, "identifier": "7277", "identifier_type": "int", "name": "TUBA4A", "properties": { "url": "http://identifiers.org/ncbigene/7277", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "tubulin, alpha 4a" }, "metanode": "Gene" }, { "id": 45812, "identifier": "PC7_1818", "identifier_type": "str", "name": "Association of licensing factors with the pre-replicative complex", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 45813, "identifier": "GO:0070182", "identifier_type": "str", "name": "DNA polymerase binding", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0070182", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 45814, "identifier": "GO:0022897", "identifier_type": "str", "name": "proton-dependent peptide secondary active transmembrane transporter activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0022897", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 45815, "identifier": "55656", "identifier_type": "int", "name": "INTS8", "properties": { "url": "http://identifiers.org/ncbigene/55656", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "integrator complex subunit 8" }, "metanode": "Gene" }, { "id": 45816, "identifier": "C0333582", "identifier_type": "str", "name": "Dystrophic calcification", "properties": { "url": "http://identifiers.org/umls/C0333582", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 45817, "identifier": "201514", "identifier_type": "int", "name": "ZNF584", "properties": { "url": "http://identifiers.org/ncbigene/201514", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "zinc finger protein 584" }, "metanode": "Gene" }, { "id": 45818, "identifier": "GO:0002088", "identifier_type": "str", "name": "lens development in camera-type eye", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0002088", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45819, "identifier": "GO:0060753", "identifier_type": "str", "name": "regulation of mast cell chemotaxis", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0060753", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 45820, "identifier": "338", "identifier_type": "int", "name": "APOB", "properties": { "url": "http://identifiers.org/ncbigene/338", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "apolipoprotein B" }, "metanode": "Gene" }, { "id": 45821, "identifier": "N0000191258", "identifier_type": "str", "name": "RNA Replicase Inhibitors", "properties": { "url": "http://purl.bioontology.org/ontology/NDFRT/N0000191258", "source": "FDA via DrugCentral", "license": "CC BY 4.0", "class_type": "Mechanism of Action" }, "metanode": "Pharmacologic Class" } ] }{ "count": 47031, "next": "