Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=45875

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45900",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=45850",
    "results": [
        {
            "id": 45873,
            "identifier": "GO:0008823",
            "identifier_type": "str",
            "name": "cupric reductase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008823",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 45874,
            "identifier": "GO:0043116",
            "identifier_type": "str",
            "name": "negative regulation of vascular permeability",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043116",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45875,
            "identifier": "C0026718",
            "identifier_type": "str",
            "name": "Mucormycosis",
            "properties": {
                "url": "http://identifiers.org/umls/C0026718",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 45876,
            "identifier": "PC7_6618",
            "identifier_type": "str",
            "name": "Prolonged ERK activation events",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 45877,
            "identifier": "10559",
            "identifier_type": "int",
            "name": "SLC35A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10559",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "solute carrier family 35 (CMP-sialic acid transporter), member A1"
            },
            "metanode": "Gene"
        },
        {
            "id": 45878,
            "identifier": "PC7_2704",
            "identifier_type": "str",
            "name": "Creation of C4 and C2 activators",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 45879,
            "identifier": "84955",
            "identifier_type": "int",
            "name": "NUDCD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84955",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "NudC domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 45880,
            "identifier": "GO:0086069",
            "identifier_type": "str",
            "name": "bundle of His cell to Purkinje myocyte communication",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0086069",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45881,
            "identifier": "DB01232",
            "identifier_type": "str",
            "name": "Saquinavir",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01232",
                "inchi": "InChI=1S/C38H50N6O5/c1-38(2,3)43-37(49)32-20-26-14-7-8-15-27(26)22-44(32)23-33(45)30(19-24-11-5-4-6-12-24)41-36(48)31(21-34(39)46)42-35(47)29-18-17-25-13-9-10-16-28(25)40-29/h4-6,9-13,16-18,26-27,30-33,45H,7-8,14-15,19-23H2,1-3H3,(H2,39,46)(H,41,48)(H,42,47)(H,43,49)/t26?,27?,30-,31-,32-,33+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=QWAXKHKRTORLEM-LINFGICFSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 45882,
            "identifier": "C0278045",
            "identifier_type": "str",
            "name": "Urine odour abnormal",
            "properties": {
                "url": "http://identifiers.org/umls/C0278045",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 45883,
            "identifier": "6846",
            "identifier_type": "int",
            "name": "XCL2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6846",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "chemokine (C motif) ligand 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 45884,
            "identifier": "3885",
            "identifier_type": "int",
            "name": "KRT34",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3885",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "keratin 34, type I"
            },
            "metanode": "Gene"
        },
        {
            "id": 45885,
            "identifier": "GO:0030890",
            "identifier_type": "str",
            "name": "positive regulation of B cell proliferation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030890",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45886,
            "identifier": "PC7_4284",
            "identifier_type": "str",
            "name": "Glypican 1 network",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 45887,
            "identifier": "PC7_5339",
            "identifier_type": "str",
            "name": "Metal ion SLC transporters",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 45888,
            "identifier": "257415",
            "identifier_type": "int",
            "name": "FAM133B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/257415",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "family with sequence similarity 133, member B"
            },
            "metanode": "Gene"
        },
        {
            "id": 45889,
            "identifier": "GO:2000364",
            "identifier_type": "str",
            "name": "regulation of STAT protein import into nucleus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000364",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45890,
            "identifier": "10169",
            "identifier_type": "int",
            "name": "SERF2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10169",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "small EDRK-rich factor 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 45891,
            "identifier": "171169",
            "identifier_type": "int",
            "name": "SPACA4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/171169",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "sperm acrosome associated 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 45892,
            "identifier": "390940",
            "identifier_type": "int",
            "name": "PINLYP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/390940",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "phospholipase A2 inhibitor and LY6/PLAUR domain containing"
            },
            "metanode": "Gene"
        },
        {
            "id": 45893,
            "identifier": "493911",
            "identifier_type": "int",
            "name": "PHOSPHO2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/493911",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "phosphatase, orphan 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 45894,
            "identifier": "GO:0023058",
            "identifier_type": "str",
            "name": "adaptation of signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0023058",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 45895,
            "identifier": "DB00743",
            "identifier_type": "str",
            "name": "Gadobenate Dimeglumine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00743",
                "inchi": "InChI=1S/C22H31N3O11.2C7H17NO5.Gd/c26-18(27)10-23(6-7-24(11-19(28)29)12-20(30)31)8-9-25(13-21(32)33)17(22(34)35)15-36-14-16-4-2-1-3-5-16;2*1-8-2-4(10)6(12)7(13)5(11)3-9;/h1-5,17H,6-15H2,(H,26,27)(H,28,29)(H,30,31)(H,32,33)(H,34,35);2*4-13H,2-3H2,1H3;/q;;;+3/p-3/t;2*4-,5+,6+,7+;/m.00./s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OCDAWJYGVOLXGZ-VPVMAENOSA-K"
            },
            "metanode": "Compound"
        },
        {
            "id": 45896,
            "identifier": "100128320",
            "identifier_type": "int",
            "name": "LOC100128320",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100128320",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "uncharacterized LOC100128320"
            },
            "metanode": "Gene"
        },
        {
            "id": 45897,
            "identifier": "GO:0007176",
            "identifier_type": "str",
            "name": "regulation of epidermal growth factor-activated receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007176",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}