Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=46275
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46300", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46250", "results": [ { "id": 46274, "identifier": "PC7_7768", "identifier_type": "str", "name": "Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 46275, "identifier": "WP615_r81193", "identifier_type": "str", "name": "Senescence and Autophagy in Cancer", "properties": { "url": "http://www.wikipathways.org/instance/WP615_r81193", "source": "WikiPathways", "license": "CC BY 3.0" }, "metanode": "Pathway" }, { "id": 46276, "identifier": "100996574", "identifier_type": "int", "name": "LOC100996574", "properties": { "url": "http://identifiers.org/ncbigene/100996574", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "9", "description": "uncharacterized LOC100996574" }, "metanode": "Gene" }, { "id": 46277, "identifier": "79625", "identifier_type": "int", "name": "NDNF", "properties": { "url": "http://identifiers.org/ncbigene/79625", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "4", "description": "neuron-derived neurotrophic factor" }, "metanode": "Gene" }, { "id": 46278, "identifier": "C0854029", "identifier_type": "str", "name": "Blood creatine increased", "properties": { "url": "http://identifiers.org/umls/C0854029", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46279, "identifier": "774", "identifier_type": "int", "name": "CACNA1B", "properties": { "url": "http://identifiers.org/ncbigene/774", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "9", "description": "calcium channel, voltage-dependent, N type, alpha 1B subunit" }, "metanode": "Gene" }, { "id": 46280, "identifier": "140465", "identifier_type": "int", "name": "MYL6B", "properties": { "url": "http://identifiers.org/ncbigene/140465", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "12", "description": "myosin, light chain 6B, alkali, smooth muscle and non-muscle" }, "metanode": "Gene" }, { "id": 46281, "identifier": "C0024291", "identifier_type": "str", "name": "Hemophagocytic lymphohistiocytosis", "properties": { "url": "http://identifiers.org/umls/C0024291", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46282, "identifier": "GO:1902532", "identifier_type": "str", "name": "negative regulation of intracellular signal transduction", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1902532", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46283, "identifier": "GO:0044242", "identifier_type": "str", "name": "cellular lipid catabolic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0044242", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46284, "identifier": "23367", "identifier_type": "int", "name": "LARP1", "properties": { "url": "http://identifiers.org/ncbigene/23367", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "5", "description": "La ribonucleoprotein domain family, member 1" }, "metanode": "Gene" }, { "id": 46285, "identifier": "C0423008", "identifier_type": "str", "name": "Eye bleeding", "properties": { "url": "http://identifiers.org/umls/C0423008", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46286, "identifier": "3227", "identifier_type": "int", "name": "HOXC11", "properties": { "url": "http://identifiers.org/ncbigene/3227", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "12", "description": "homeobox C11" }, "metanode": "Gene" }, { "id": 46287, "identifier": "GO:0010447", "identifier_type": "str", "name": "response to acidic pH", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0010447", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46288, "identifier": "UBERON:0002486", "identifier_type": "str", "name": "glottis", "properties": { "url": "http://purl.obolibrary.org/obo/UBERON_0002486", "bto_id": "BTO:0001627", "source": "Uberon", "license": "CC BY 3.0", "mesh_id": "D005931" }, "metanode": "Anatomy" }, { "id": 46289, "identifier": "GO:0030286", "identifier_type": "str", "name": "dynein complex", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0030286", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 46290, "identifier": "DB00612", "identifier_type": "str", "name": "Bisoprolol", "properties": { "url": "http://www.drugbank.ca/drugs/DB00612", "inchi": "InChI=1S/C18H31NO4/c1-14(2)19-11-17(20)13-23-18-7-5-16(6-8-18)12-21-9-10-22-15(3)4/h5-8,14-15,17,19-20H,9-13H2,1-4H3", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=VHYCDWMUTMEGQY-UHFFFAOYSA-N" }, "metanode": "Compound" }, { "id": 46291, "identifier": "392617", "identifier_type": "int", "name": "ELFN1", "properties": { "url": "http://identifiers.org/ncbigene/392617", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "7", "description": "extracellular leucine-rich repeat and fibronectin type III domain containing 1" }, "metanode": "Gene" }, { "id": 46292, "identifier": "GO:0046320", "identifier_type": "str", "name": "regulation of fatty acid oxidation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0046320", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46293, "identifier": "GO:0005865", "identifier_type": "str", "name": "striated muscle thin filament", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0005865", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 46294, "identifier": "5680", "identifier_type": "int", "name": "PSG11", "properties": { "url": "http://identifiers.org/ncbigene/5680", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "pregnancy specific beta-1-glycoprotein 11" }, "metanode": "Gene" }, { "id": 46295, "identifier": "10347", "identifier_type": "int", "name": "ABCA7", "properties": { "url": "http://identifiers.org/ncbigene/10347", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "ATP-binding cassette, sub-family A (ABC1), member 7" }, "metanode": "Gene" }, { "id": 46296, "identifier": "51622", "identifier_type": "int", "name": "CCZ1", "properties": { "url": "http://identifiers.org/ncbigene/51622", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "7", "description": "CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)" }, "metanode": "Gene" }, { "id": 46297, "identifier": "80183", "identifier_type": "int", "name": "KIAA0226L", "properties": { "url": "http://identifiers.org/ncbigene/80183", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "13", "description": "KIAA0226-like" }, "metanode": "Gene" }, { "id": 46298, "identifier": "C0853193", "identifier_type": "str", "name": "Bipolar I disorder", "properties": { "url": "http://identifiers.org/umls/C0853193", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" } ] }{ "count": 47031, "next": "