Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=46425

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46450",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46400",
    "results": [
        {
            "id": 46423,
            "identifier": "4638",
            "identifier_type": "int",
            "name": "MYLK",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4638",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "myosin light chain kinase"
            },
            "metanode": "Gene"
        },
        {
            "id": 46424,
            "identifier": "9647",
            "identifier_type": "int",
            "name": "PPM1F",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9647",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "protein phosphatase, Mg2+/Mn2+ dependent, 1F"
            },
            "metanode": "Gene"
        },
        {
            "id": 46425,
            "identifier": "347344",
            "identifier_type": "int",
            "name": "ZNF81",
            "properties": {
                "url": "http://identifiers.org/ncbigene/347344",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "zinc finger protein 81"
            },
            "metanode": "Gene"
        },
        {
            "id": 46426,
            "identifier": "C0340726",
            "identifier_type": "str",
            "name": "Embolism venous",
            "properties": {
                "url": "http://identifiers.org/umls/C0340726",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 46427,
            "identifier": "DB00603",
            "identifier_type": "str",
            "name": "Medroxyprogesterone Acetate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00603",
                "inchi": "InChI=1S/C24H34O4/c1-14-12-18-19(22(4)9-6-17(27)13-21(14)22)7-10-23(5)20(18)8-11-24(23,15(2)25)28-16(3)26/h13-14,18-20H,6-12H2,1-5H3/t14-,18+,19-,20-,22+,23-,24-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=PSGAAPLEWMOORI-PEINSRQWSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 46428,
            "identifier": "DB02300",
            "identifier_type": "str",
            "name": "Calcipotriol",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB02300",
                "inchi": "InChI=1S/C27H40O3/c1-17(6-13-25(29)20-8-9-20)23-11-12-24-19(5-4-14-27(23,24)3)7-10-21-15-22(28)16-26(30)18(21)2/h6-7,10,13,17,20,22-26,28-30H,2,4-5,8-9,11-12,14-16H2,1,3H3/b13-6+,19-7+,21-10-/t17-,22-,23-,24+,25-,26+,27-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=LWQQLNNNIPYSNX-UROSTWAQSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 46429,
            "identifier": "GO:0006119",
            "identifier_type": "str",
            "name": "oxidative phosphorylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006119",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 46430,
            "identifier": "7091",
            "identifier_type": "int",
            "name": "TLE4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7091",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "transducin-like enhancer of split 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 46431,
            "identifier": "GO:0008076",
            "identifier_type": "str",
            "name": "voltage-gated potassium channel complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008076",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 46432,
            "identifier": "57113",
            "identifier_type": "int",
            "name": "TRPC7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57113",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "transient receptor potential cation channel, subfamily C, member 7"
            },
            "metanode": "Gene"
        },
        {
            "id": 46433,
            "identifier": "C0018991",
            "identifier_type": "str",
            "name": "Hemiplegia",
            "properties": {
                "url": "http://identifiers.org/umls/C0018991",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 46434,
            "identifier": "105377532",
            "identifier_type": "int",
            "name": "LOC105377532",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105377532",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "DNA dC->dU-editing enzyme APOBEC-3G-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 46435,
            "identifier": "PC7_1994",
            "identifier_type": "str",
            "name": "BH3-only proteins associate with and inactivate anti-apoptotic BCL-2 members",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 46860,
            "identifier": "C0860942",
            "identifier_type": "str",
            "name": "Creatine increased",
            "properties": {
                "url": "http://identifiers.org/umls/C0860942",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 46436,
            "identifier": "26056",
            "identifier_type": "int",
            "name": "RAB11FIP5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26056",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "RAB11 family interacting protein 5 (class I)"
            },
            "metanode": "Gene"
        },
        {
            "id": 46437,
            "identifier": "DB06594",
            "identifier_type": "str",
            "name": "Agomelatine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB06594",
                "inchi": "InChI=1S/C15H17NO2/c1-11(17)16-9-8-13-5-3-4-12-6-7-14(18-2)10-15(12)13/h3-7,10H,8-9H2,1-2H3,(H,16,17)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=YJYPHIXNFHFHND-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 46438,
            "identifier": "55486",
            "identifier_type": "int",
            "name": "PARL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55486",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "presenilin associated, rhomboid-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 46439,
            "identifier": "GO:0034665",
            "identifier_type": "str",
            "name": "integrin alpha1-beta1 complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034665",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 46440,
            "identifier": "79019",
            "identifier_type": "int",
            "name": "CENPM",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79019",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "centromere protein M"
            },
            "metanode": "Gene"
        },
        {
            "id": 46441,
            "identifier": "GO:0060754",
            "identifier_type": "str",
            "name": "positive regulation of mast cell chemotaxis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060754",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 46442,
            "identifier": "152",
            "identifier_type": "int",
            "name": "ADRA2C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/152",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "adrenoceptor alpha 2C"
            },
            "metanode": "Gene"
        },
        {
            "id": 46443,
            "identifier": "8915",
            "identifier_type": "int",
            "name": "BCL10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8915",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "B-cell CLL/lymphoma 10"
            },
            "metanode": "Gene"
        },
        {
            "id": 46444,
            "identifier": "399664",
            "identifier_type": "int",
            "name": "MEX3D",
            "properties": {
                "url": "http://identifiers.org/ncbigene/399664",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "mex-3 RNA binding family member D"
            },
            "metanode": "Gene"
        },
        {
            "id": 46445,
            "identifier": "389558",
            "identifier_type": "int",
            "name": "FAM180A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/389558",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "family with sequence similarity 180, member A"
            },
            "metanode": "Gene"
        },
        {
            "id": 46446,
            "identifier": "2621",
            "identifier_type": "int",
            "name": "GAS6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2621",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "growth arrest-specific 6"
            },
            "metanode": "Gene"
        }
    ]
}