Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=46625
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46650", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46600", "results": [ { "id": 46624, "identifier": "GO:0061005", "identifier_type": "str", "name": "cell differentiation involved in kidney development", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0061005", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46625, "identifier": "84918", "identifier_type": "int", "name": "LRP11", "properties": { "url": "http://identifiers.org/ncbigene/84918", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "6", "description": "low density lipoprotein receptor-related protein 11" }, "metanode": "Gene" }, { "id": 46626, "identifier": "PC7_7394", "identifier_type": "str", "name": "Scavenging by Class F Receptors", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 46627, "identifier": "729431", "identifier_type": "int", "name": "GAGE12E", "properties": { "url": "http://identifiers.org/ncbigene/729431", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "X", "description": "G antigen 12E" }, "metanode": "Gene" }, { "id": 46628, "identifier": "115330", "identifier_type": "int", "name": "GPR146", "properties": { "url": "http://identifiers.org/ncbigene/115330", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "7", "description": "G protein-coupled receptor 146" }, "metanode": "Gene" }, { "id": 46629, "identifier": "GO:0051342", "identifier_type": "str", "name": "regulation of cyclic-nucleotide phosphodiesterase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0051342", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46630, "identifier": "6921", "identifier_type": "int", "name": "TCEB1", "properties": { "url": "http://identifiers.org/ncbigene/6921", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)" }, "metanode": "Gene" }, { "id": 46631, "identifier": "GO:0036303", "identifier_type": "str", "name": "lymph vessel morphogenesis", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0036303", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46632, "identifier": "727866", "identifier_type": "int", "name": "FAM156B", "properties": { "url": "http://identifiers.org/ncbigene/727866", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "X", "description": "family with sequence similarity 156, member B" }, "metanode": "Gene" }, { "id": 46633, "identifier": "GO:0070831", "identifier_type": "str", "name": "basement membrane assembly", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0070831", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46634, "identifier": "55316", "identifier_type": "int", "name": "RSAD1", "properties": { "url": "http://identifiers.org/ncbigene/55316", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "17", "description": "radical S-adenosyl methionine domain containing 1" }, "metanode": "Gene" }, { "id": 46635, "identifier": "158219", "identifier_type": "int", "name": "TTC39B", "properties": { "url": "http://identifiers.org/ncbigene/158219", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "9", "description": "tetratricopeptide repeat domain 39B" }, "metanode": "Gene" }, { "id": 46636, "identifier": "C0002726", "identifier_type": "str", "name": "Amyloidosis", "properties": { "url": "http://identifiers.org/umls/C0002726", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46637, "identifier": "GO:0043401", "identifier_type": "str", "name": "steroid hormone mediated signaling pathway", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0043401", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46638, "identifier": "C0852566", "identifier_type": "str", "name": "Sleep phase rhythm disturbance", "properties": { "url": "http://identifiers.org/umls/C0852566", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46639, "identifier": "126", "identifier_type": "int", "name": "ADH1C", "properties": { "url": "http://identifiers.org/ncbigene/126", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "4", "description": "alcohol dehydrogenase 1C (class I), gamma polypeptide" }, "metanode": "Gene" }, { "id": 46640, "identifier": "PC7_4786", "identifier_type": "str", "name": "Inwardly rectifying K+ channels", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 46641, "identifier": "GO:0015168", "identifier_type": "str", "name": "glycerol transmembrane transporter activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0015168", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 46642, "identifier": "GO:0045125", "identifier_type": "str", "name": "bioactive lipid receptor activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0045125", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 46643, "identifier": "81318", "identifier_type": "int", "name": "OR4A5", "properties": { "url": "http://identifiers.org/ncbigene/81318", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "11", "description": "olfactory receptor, family 4, subfamily A, member 5" }, "metanode": "Gene" }, { "id": 46644, "identifier": "GO:0016233", "identifier_type": "str", "name": "telomere capping", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0016233", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46645, "identifier": "11214", "identifier_type": "int", "name": "AKAP13", "properties": { "url": "http://identifiers.org/ncbigene/11214", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "15", "description": "A kinase (PRKA) anchor protein 13" }, "metanode": "Gene" }, { "id": 46646, "identifier": "C0376288", "identifier_type": "str", "name": "Amaurosis", "properties": { "url": "http://identifiers.org/umls/C0376288", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46647, "identifier": "GO:0018479", "identifier_type": "str", "name": "benzaldehyde dehydrogenase (NAD+) activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0018479", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 46648, "identifier": "GO:0007596", "identifier_type": "str", "name": "blood coagulation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0007596", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" } ] }{ "count": 47031, "next": "