Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=4675

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=4700",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=4650",
    "results": [
        {
            "id": 4663,
            "identifier": "GO:0006405",
            "identifier_type": "str",
            "name": "RNA export from nucleus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006405",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4664,
            "identifier": "GO:1901629",
            "identifier_type": "str",
            "name": "regulation of presynaptic membrane organization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1901629",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4665,
            "identifier": "582",
            "identifier_type": "int",
            "name": "BBS1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/582",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "Bardet-Biedl syndrome 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4666,
            "identifier": "9201",
            "identifier_type": "int",
            "name": "DCLK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9201",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "doublecortin-like kinase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4667,
            "identifier": "GO:0043200",
            "identifier_type": "str",
            "name": "response to amino acid",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043200",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4668,
            "identifier": "GO:0032722",
            "identifier_type": "str",
            "name": "positive regulation of chemokine production",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032722",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4669,
            "identifier": "DB00537",
            "identifier_type": "str",
            "name": "Ciprofloxacin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00537",
                "inchi": "InChI=1S/C17H18FN3O3/c18-13-7-11-14(8-15(13)20-5-3-19-4-6-20)21(10-1-2-10)9-12(16(11)22)17(23)24/h7-10,19H,1-6H2,(H,23,24)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=MYSWGUAQZAJSOK-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 4670,
            "identifier": "27040",
            "identifier_type": "int",
            "name": "LAT",
            "properties": {
                "url": "http://identifiers.org/ncbigene/27040",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "linker for activation of T cells"
            },
            "metanode": "Gene"
        },
        {
            "id": 4671,
            "identifier": "3035",
            "identifier_type": "int",
            "name": "HARS",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3035",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "histidyl-tRNA synthetase"
            },
            "metanode": "Gene"
        },
        {
            "id": 4672,
            "identifier": "DB01384",
            "identifier_type": "str",
            "name": "Paramethasone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01384",
                "inchi": "InChI=1S/C22H29FO5/c1-11-6-14-13-8-16(23)15-7-12(25)4-5-20(15,2)19(13)17(26)9-21(14,3)22(11,28)18(27)10-24/h4-5,7,11,13-14,16-17,19,24,26,28H,6,8-10H2,1-3H3/t11-,13+,14+,16+,17+,19-,20+,21+,22+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=MKPDWECBUAZOHP-AFYJWTTESA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 4673,
            "identifier": "57596",
            "identifier_type": "int",
            "name": "BEGAIN",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57596",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "brain-enriched guanylate kinase-associated"
            },
            "metanode": "Gene"
        },
        {
            "id": 4674,
            "identifier": "92104",
            "identifier_type": "int",
            "name": "TTC30A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/92104",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "tetratricopeptide repeat domain 30A"
            },
            "metanode": "Gene"
        },
        {
            "id": 4675,
            "identifier": "80131",
            "identifier_type": "int",
            "name": "LRRC8E",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80131",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "leucine rich repeat containing 8 family, member E"
            },
            "metanode": "Gene"
        },
        {
            "id": 4676,
            "identifier": "GO:0033993",
            "identifier_type": "str",
            "name": "response to lipid",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033993",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4677,
            "identifier": "338785",
            "identifier_type": "int",
            "name": "KRT79",
            "properties": {
                "url": "http://identifiers.org/ncbigene/338785",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "keratin 79, type II"
            },
            "metanode": "Gene"
        },
        {
            "id": 4678,
            "identifier": "51430",
            "identifier_type": "int",
            "name": "SUCO",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51430",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "SUN domain containing ossification factor"
            },
            "metanode": "Gene"
        },
        {
            "id": 4679,
            "identifier": "GO:0034185",
            "identifier_type": "str",
            "name": "apolipoprotein binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034185",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 4680,
            "identifier": "GO:0042571",
            "identifier_type": "str",
            "name": "immunoglobulin complex, circulating",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042571",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 4681,
            "identifier": "116238",
            "identifier_type": "int",
            "name": "TLCD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/116238",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "TLC domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4682,
            "identifier": "124857",
            "identifier_type": "int",
            "name": "WFIKKN2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/124857",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 4683,
            "identifier": "GO:0051454",
            "identifier_type": "str",
            "name": "intracellular pH elevation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051454",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4684,
            "identifier": "GO:0043406",
            "identifier_type": "str",
            "name": "positive regulation of MAP kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043406",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4685,
            "identifier": "84311",
            "identifier_type": "int",
            "name": "MRPL45",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84311",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "mitochondrial ribosomal protein L45"
            },
            "metanode": "Gene"
        },
        {
            "id": 4686,
            "identifier": "GO:0046519",
            "identifier_type": "str",
            "name": "sphingoid metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046519",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4687,
            "identifier": "PC7_4156",
            "identifier_type": "str",
            "name": "Global Genomic NER (GG-NER)",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        }
    ]
}