Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=46800

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46825",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46775",
    "results": [
        {
            "id": 46798,
            "identifier": "285600",
            "identifier_type": "int",
            "name": "KIAA0825",
            "properties": {
                "url": "http://identifiers.org/ncbigene/285600",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "KIAA0825"
            },
            "metanode": "Gene"
        },
        {
            "id": 46799,
            "identifier": "GO:0085020",
            "identifier_type": "str",
            "name": "protein K6-linked ubiquitination",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0085020",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 46800,
            "identifier": "199870",
            "identifier_type": "int",
            "name": "FAM76A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/199870",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "family with sequence similarity 76, member A"
            },
            "metanode": "Gene"
        },
        {
            "id": 46801,
            "identifier": "GO:0071404",
            "identifier_type": "str",
            "name": "cellular response to low-density lipoprotein particle stimulus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071404",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 46802,
            "identifier": "DB00944",
            "identifier_type": "str",
            "name": "Demecarium",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00944",
                "inchi": "InChI=1S/C32H52N4O4/c1-33(31(37)39-29-21-17-19-27(25-29)35(3,4)5)23-15-13-11-9-10-12-14-16-24-34(2)32(38)40-30-22-18-20-28(26-30)36(6,7)8/h17-22,25-26H,9-16,23-24H2,1-8H3/q+2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=RWZVPVOZTJJMNU-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 46803,
            "identifier": "C1096393",
            "identifier_type": "str",
            "name": "Body fat disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C1096393",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 46804,
            "identifier": "C0085423",
            "identifier_type": "str",
            "name": "Gram-negative bacterial infection NOS",
            "properties": {
                "url": "http://identifiers.org/umls/C0085423",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 46805,
            "identifier": "1147",
            "identifier_type": "int",
            "name": "CHUK",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1147",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "conserved helix-loop-helix ubiquitous kinase"
            },
            "metanode": "Gene"
        },
        {
            "id": 46806,
            "identifier": "9654",
            "identifier_type": "int",
            "name": "TTLL4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9654",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "tubulin tyrosine ligase-like family member 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 46807,
            "identifier": "GO:0072106",
            "identifier_type": "str",
            "name": "regulation of ureteric bud formation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072106",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 46808,
            "identifier": "C0018081",
            "identifier_type": "str",
            "name": "Gonorrhoea",
            "properties": {
                "url": "http://identifiers.org/umls/C0018081",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 46809,
            "identifier": "C0039591",
            "identifier_type": "str",
            "name": "Testicular pain",
            "properties": {
                "url": "http://identifiers.org/umls/C0039591",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 46810,
            "identifier": "119774",
            "identifier_type": "int",
            "name": "OR52K2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/119774",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "olfactory receptor, family 52, subfamily K, member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 46811,
            "identifier": "DB08967",
            "identifier_type": "str",
            "name": "Dimetotiazine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08967",
                "inchi": "InChI=1/C19H25N3O2S2.CH4O3S/c1-14(20(2)3)13-22-16-8-6-7-9-18(16)25-19-11-10-15(12-17(19)22)26(23,24)21(4)5;1-5(2,3)4/h6-12,14H,13H2,1-5H3;1H3,(H,2,3,4)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JGKVKXPDDVRUKC-UHFFFAOYNA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 46812,
            "identifier": "C1609538",
            "identifier_type": "str",
            "name": "Latent tuberculosis",
            "properties": {
                "url": "http://identifiers.org/umls/C1609538",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 46813,
            "identifier": "165100",
            "identifier_type": "int",
            "name": "C2orf57",
            "properties": {
                "url": "http://identifiers.org/ncbigene/165100",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "chromosome 2 open reading frame 57"
            },
            "metanode": "Gene"
        },
        {
            "id": 46814,
            "identifier": "GO:0072702",
            "identifier_type": "str",
            "name": "response to methyl methanesulfonate",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072702",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 46815,
            "identifier": "GO:0051056",
            "identifier_type": "str",
            "name": "regulation of small GTPase mediated signal transduction",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051056",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 46816,
            "identifier": "WP1991_r82940",
            "identifier_type": "str",
            "name": "SRF and miRs in Smooth Muscle Differentiation and Proliferation",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP1991_r82940",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 46817,
            "identifier": "GO:0034687",
            "identifier_type": "str",
            "name": "integrin alphaL-beta2 complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034687",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 46818,
            "identifier": "57415",
            "identifier_type": "int",
            "name": "C3orf14",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57415",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "chromosome 3 open reading frame 14"
            },
            "metanode": "Gene"
        },
        {
            "id": 46819,
            "identifier": "10592",
            "identifier_type": "int",
            "name": "SMC2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10592",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "structural maintenance of chromosomes 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 46820,
            "identifier": "N0000182139",
            "identifier_type": "str",
            "name": "Cytochrome P450 2B6 Inhibitors",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000182139",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 46821,
            "identifier": "GO:1990247",
            "identifier_type": "str",
            "name": "N6-methyladenosine-containing RNA binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1990247",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 46822,
            "identifier": "GO:0030804",
            "identifier_type": "str",
            "name": "positive regulation of cyclic nucleotide biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030804",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}