Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=46800
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46825", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46775", "results": [ { "id": 46798, "identifier": "285600", "identifier_type": "int", "name": "KIAA0825", "properties": { "url": "http://identifiers.org/ncbigene/285600", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "5", "description": "KIAA0825" }, "metanode": "Gene" }, { "id": 46799, "identifier": "GO:0085020", "identifier_type": "str", "name": "protein K6-linked ubiquitination", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0085020", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46800, "identifier": "199870", "identifier_type": "int", "name": "FAM76A", "properties": { "url": "http://identifiers.org/ncbigene/199870", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "family with sequence similarity 76, member A" }, "metanode": "Gene" }, { "id": 46801, "identifier": "GO:0071404", "identifier_type": "str", "name": "cellular response to low-density lipoprotein particle stimulus", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0071404", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46802, "identifier": "DB00944", "identifier_type": "str", "name": "Demecarium", "properties": { "url": "http://www.drugbank.ca/drugs/DB00944", "inchi": "InChI=1S/C32H52N4O4/c1-33(31(37)39-29-21-17-19-27(25-29)35(3,4)5)23-15-13-11-9-10-12-14-16-24-34(2)32(38)40-30-22-18-20-28(26-30)36(6,7)8/h17-22,25-26H,9-16,23-24H2,1-8H3/q+2", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=RWZVPVOZTJJMNU-UHFFFAOYSA-N" }, "metanode": "Compound" }, { "id": 46803, "identifier": "C1096393", "identifier_type": "str", "name": "Body fat disorder", "properties": { "url": "http://identifiers.org/umls/C1096393", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46804, "identifier": "C0085423", "identifier_type": "str", "name": "Gram-negative bacterial infection NOS", "properties": { "url": "http://identifiers.org/umls/C0085423", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46805, "identifier": "1147", "identifier_type": "int", "name": "CHUK", "properties": { "url": "http://identifiers.org/ncbigene/1147", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "conserved helix-loop-helix ubiquitous kinase" }, "metanode": "Gene" }, { "id": 46806, "identifier": "9654", "identifier_type": "int", "name": "TTLL4", "properties": { "url": "http://identifiers.org/ncbigene/9654", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "tubulin tyrosine ligase-like family member 4" }, "metanode": "Gene" }, { "id": 46807, "identifier": "GO:0072106", "identifier_type": "str", "name": "regulation of ureteric bud formation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0072106", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46808, "identifier": "C0018081", "identifier_type": "str", "name": "Gonorrhoea", "properties": { "url": "http://identifiers.org/umls/C0018081", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46809, "identifier": "C0039591", "identifier_type": "str", "name": "Testicular pain", "properties": { "url": "http://identifiers.org/umls/C0039591", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46810, "identifier": "119774", "identifier_type": "int", "name": "OR52K2", "properties": { "url": "http://identifiers.org/ncbigene/119774", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "11", "description": "olfactory receptor, family 52, subfamily K, member 2" }, "metanode": "Gene" }, { "id": 46811, "identifier": "DB08967", "identifier_type": "str", "name": "Dimetotiazine", "properties": { "url": "http://www.drugbank.ca/drugs/DB08967", "inchi": "InChI=1/C19H25N3O2S2.CH4O3S/c1-14(20(2)3)13-22-16-8-6-7-9-18(16)25-19-11-10-15(12-17(19)22)26(23,24)21(4)5;1-5(2,3)4/h6-12,14H,13H2,1-5H3;1H3,(H,2,3,4)", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=JGKVKXPDDVRUKC-UHFFFAOYNA-N" }, "metanode": "Compound" }, { "id": 46812, "identifier": "C1609538", "identifier_type": "str", "name": "Latent tuberculosis", "properties": { "url": "http://identifiers.org/umls/C1609538", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46813, "identifier": "165100", "identifier_type": "int", "name": "C2orf57", "properties": { "url": "http://identifiers.org/ncbigene/165100", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "chromosome 2 open reading frame 57" }, "metanode": "Gene" }, { "id": 46814, "identifier": "GO:0072702", "identifier_type": "str", "name": "response to methyl methanesulfonate", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0072702", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46815, "identifier": "GO:0051056", "identifier_type": "str", "name": "regulation of small GTPase mediated signal transduction", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0051056", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46816, "identifier": "WP1991_r82940", "identifier_type": "str", "name": "SRF and miRs in Smooth Muscle Differentiation and Proliferation", "properties": { "url": "http://www.wikipathways.org/instance/WP1991_r82940", "source": "WikiPathways", "license": "CC BY 3.0" }, "metanode": "Pathway" }, { "id": 46817, "identifier": "GO:0034687", "identifier_type": "str", "name": "integrin alphaL-beta2 complex", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0034687", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 46818, "identifier": "57415", "identifier_type": "int", "name": "C3orf14", "properties": { "url": "http://identifiers.org/ncbigene/57415", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "3", "description": "chromosome 3 open reading frame 14" }, "metanode": "Gene" }, { "id": 46819, "identifier": "10592", "identifier_type": "int", "name": "SMC2", "properties": { "url": "http://identifiers.org/ncbigene/10592", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "9", "description": "structural maintenance of chromosomes 2" }, "metanode": "Gene" }, { "id": 46820, "identifier": "N0000182139", "identifier_type": "str", "name": "Cytochrome P450 2B6 Inhibitors", "properties": { "url": "http://purl.bioontology.org/ontology/NDFRT/N0000182139", "source": "FDA via DrugCentral", "license": "CC BY 4.0", "class_type": "Mechanism of Action" }, "metanode": "Pharmacologic Class" }, { "id": 46821, "identifier": "GO:1990247", "identifier_type": "str", "name": "N6-methyladenosine-containing RNA binding", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1990247", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 46822, "identifier": "GO:0030804", "identifier_type": "str", "name": "positive regulation of cyclic nucleotide biosynthetic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0030804", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" } ] }{ "count": 47031, "next": "