Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=46975
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=47000", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=46950", "results": [ { "id": 46975, "identifier": "4883", "identifier_type": "int", "name": "NPR3", "properties": { "url": "http://identifiers.org/ncbigene/4883", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "5", "description": "natriuretic peptide receptor 3" }, "metanode": "Gene" }, { "id": 46976, "identifier": "55033", "identifier_type": "int", "name": "FKBP14", "properties": { "url": "http://identifiers.org/ncbigene/55033", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "7", "description": "FK506 binding protein 14, 22 kDa" }, "metanode": "Gene" }, { "id": 46977, "identifier": "C3665386", "identifier_type": "str", "name": "Abnormal vision", "properties": { "url": "http://identifiers.org/umls/C3665386", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46978, "identifier": "85461", "identifier_type": "int", "name": "TANC1", "properties": { "url": "http://identifiers.org/ncbigene/85461", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1" }, "metanode": "Gene" }, { "id": 46979, "identifier": "D005600", "identifier_type": "str", "name": "Fragile X Syndrome", "properties": { "url": "http://identifiers.org/mesh/D005600", "source": "MeSH", "license": "CC0 1.0" }, "metanode": "Symptom" }, { "id": 46980, "identifier": "GO:0060988", "identifier_type": "str", "name": "lipid tube assembly", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0060988", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46981, "identifier": "7336", "identifier_type": "int", "name": "UBE2V2", "properties": { "url": "http://identifiers.org/ncbigene/7336", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "ubiquitin-conjugating enzyme E2 variant 2" }, "metanode": "Gene" }, { "id": 46982, "identifier": "GO:2000179", "identifier_type": "str", "name": "positive regulation of neural precursor cell proliferation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_2000179", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46983, "identifier": "DOID:635", "identifier_type": "str", "name": "acquired immunodeficiency syndrome", "properties": { "url": "http://purl.obolibrary.org/obo/DOID_635", "source": "Disease Ontology", "license": "CC BY 3.0" }, "metanode": "Disease" }, { "id": 46984, "identifier": "GO:0071677", "identifier_type": "str", "name": "positive regulation of mononuclear cell migration", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0071677", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46985, "identifier": "GO:1902894", "identifier_type": "str", "name": "negative regulation of pri-miRNA transcription from RNA polymerase II promoter", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1902894", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46986, "identifier": "105377777", "identifier_type": "int", "name": "LOC105377777", "properties": { "url": "http://identifiers.org/ncbigene/105377777", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "uncharacterized LOC105377777" }, "metanode": "Gene" }, { "id": 46987, "identifier": "55731", "identifier_type": "int", "name": "FAM222B", "properties": { "url": "http://identifiers.org/ncbigene/55731", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "17", "description": "family with sequence similarity 222, member B" }, "metanode": "Gene" }, { "id": 46988, "identifier": "GO:0006983", "identifier_type": "str", "name": "ER overload response", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0006983", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46989, "identifier": "348303", "identifier_type": "int", "name": "SELV", "properties": { "url": "http://identifiers.org/ncbigene/348303", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "selenoprotein V" }, "metanode": "Gene" }, { "id": 46990, "identifier": "100128731", "identifier_type": "int", "name": "OST4", "properties": { "url": "http://identifiers.org/ncbigene/100128731", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "oligosaccharyltransferase 4 homolog (S. cerevisiae)" }, "metanode": "Gene" }, { "id": 46991, "identifier": "125206", "identifier_type": "int", "name": "SLC5A10", "properties": { "url": "http://identifiers.org/ncbigene/125206", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "17", "description": "solute carrier family 5 (sodium/sugar cotransporter), member 10" }, "metanode": "Gene" }, { "id": 46992, "identifier": "DB01620", "identifier_type": "str", "name": "Pheniramine", "properties": { "url": "http://www.drugbank.ca/drugs/DB01620", "inchi": "InChI=1S/C16H20N2/c1-18(2)13-11-15(14-8-4-3-5-9-14)16-10-6-7-12-17-16/h3-10,12,15H,11,13H2,1-2H3", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=IJHNSHDBIRRJRN-UHFFFAOYSA-N" }, "metanode": "Compound" }, { "id": 46993, "identifier": "GO:0055100", "identifier_type": "str", "name": "adiponectin binding", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0055100", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 46994, "identifier": "728458", "identifier_type": "int", "name": "OPN1MW2", "properties": { "url": "http://identifiers.org/ncbigene/728458", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "X", "description": "opsin 1 (cone pigments), medium-wave-sensitive 2" }, "metanode": "Gene" }, { "id": 46995, "identifier": "GO:0070187", "identifier_type": "str", "name": "telosome", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0070187", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 46996, "identifier": "C0010520", "identifier_type": "str", "name": "Cyanosis", "properties": { "url": "http://identifiers.org/umls/C0010520", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 46997, "identifier": "GO:0010755", "identifier_type": "str", "name": "regulation of plasminogen activation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0010755", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46998, "identifier": "GO:0002064", "identifier_type": "str", "name": "epithelial cell development", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0002064", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 46999, "identifier": "57555", "identifier_type": "int", "name": "NLGN2", "properties": { "url": "http://identifiers.org/ncbigene/57555", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "17", "description": "neuroligin 2" }, "metanode": "Gene" } ] }{ "count": 47031, "next": "