Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=4875

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=4900",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=4850",
    "results": [
        {
            "id": 4864,
            "identifier": "C0553681",
            "identifier_type": "str",
            "name": "Hypofibrinogenaemia",
            "properties": {
                "url": "http://identifiers.org/umls/C0553681",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 4865,
            "identifier": "164237",
            "identifier_type": "int",
            "name": "WFDC13",
            "properties": {
                "url": "http://identifiers.org/ncbigene/164237",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "WAP four-disulfide core domain 13"
            },
            "metanode": "Gene"
        },
        {
            "id": 4866,
            "identifier": "222894",
            "identifier_type": "int",
            "name": "FERD3L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/222894",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "Fer3-like bHLH transcription factor"
            },
            "metanode": "Gene"
        },
        {
            "id": 4867,
            "identifier": "121364",
            "identifier_type": "int",
            "name": "OR10A7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/121364",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "olfactory receptor, family 10, subfamily A, member 7"
            },
            "metanode": "Gene"
        },
        {
            "id": 4868,
            "identifier": "3119",
            "identifier_type": "int",
            "name": "HLA-DQB1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3119",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "major histocompatibility complex, class II, DQ beta 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4869,
            "identifier": "5334",
            "identifier_type": "int",
            "name": "PLCL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5334",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "phospholipase C-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4870,
            "identifier": "55228",
            "identifier_type": "int",
            "name": "PNMAL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55228",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "paraneoplastic Ma antigen family-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4871,
            "identifier": "DB01369",
            "identifier_type": "str",
            "name": "Quinupristin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01369",
                "inchi": "InChI=1S/C53H67N9O10S/c1-6-37-50(68)61-23-11-14-38(61)51(69)59(5)40(26-32-16-18-36(19-17-32)58(3)4)52(70)62-28-35(30-73-43-29-60-24-20-33(43)21-25-60)42(64)27-39(62)47(65)57-45(34-12-8-7-9-13-34)53(71)72-31(2)44(48(66)55-37)56-49(67)46-41(63)15-10-22-54-46/h7-10,12-13,15-19,22,31,33,35,37-40,43-45,63H,6,11,14,20-21,23-30H2,1-5H3,(H,55,66)(H,56,67)(H,57,65)/t31-,35?,37-,38+,39?,40+,43-,44+,45+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WTHRRGMBUAHGNI-MJWHERSYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 4872,
            "identifier": "C0014863",
            "identifier_type": "str",
            "name": "Oesophageal spasm",
            "properties": {
                "url": "http://identifiers.org/umls/C0014863",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 4873,
            "identifier": "GO:1901620",
            "identifier_type": "str",
            "name": "regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1901620",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4874,
            "identifier": "GO:0045778",
            "identifier_type": "str",
            "name": "positive regulation of ossification",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045778",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4875,
            "identifier": "GO:0045423",
            "identifier_type": "str",
            "name": "regulation of granulocyte macrophage colony-stimulating factor biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045423",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4876,
            "identifier": "GO:0004535",
            "identifier_type": "str",
            "name": "poly(A)-specific ribonuclease activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004535",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 4877,
            "identifier": "PC7_4660",
            "identifier_type": "str",
            "name": "IRF3-mediated induction of type I IFN",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 4878,
            "identifier": "23173",
            "identifier_type": "int",
            "name": "METAP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23173",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "methionyl aminopeptidase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4879,
            "identifier": "WP3596_r84855",
            "identifier_type": "str",
            "name": "miR-517 relationship with ARCN1 and USP1",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP3596_r84855",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 4880,
            "identifier": "440050",
            "identifier_type": "int",
            "name": "KRTAP5-7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/440050",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "keratin associated protein 5-7"
            },
            "metanode": "Gene"
        },
        {
            "id": 4881,
            "identifier": "346157",
            "identifier_type": "int",
            "name": "ZNF391",
            "properties": {
                "url": "http://identifiers.org/ncbigene/346157",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "zinc finger protein 391"
            },
            "metanode": "Gene"
        },
        {
            "id": 4882,
            "identifier": "GO:0010961",
            "identifier_type": "str",
            "name": "cellular magnesium ion homeostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010961",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4883,
            "identifier": "26496",
            "identifier_type": "int",
            "name": "OR10A3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26496",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "olfactory receptor, family 10, subfamily A, member 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 4884,
            "identifier": "GO:0045046",
            "identifier_type": "str",
            "name": "protein import into peroxisome membrane",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045046",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4885,
            "identifier": "GO:0044571",
            "identifier_type": "str",
            "name": "[2Fe-2S] cluster assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044571",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4886,
            "identifier": "GO:0046835",
            "identifier_type": "str",
            "name": "carbohydrate phosphorylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046835",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4887,
            "identifier": "C0854495",
            "identifier_type": "str",
            "name": "Hepatitis F",
            "properties": {
                "url": "http://identifiers.org/umls/C0854495",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 4888,
            "identifier": "GO:0090207",
            "identifier_type": "str",
            "name": "regulation of triglyceride metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090207",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}