Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=4925

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=4950",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=4900",
    "results": [
        {
            "id": 4914,
            "identifier": "DB01063",
            "identifier_type": "str",
            "name": "Acetophenazine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01063",
                "inchi": "InChI=1S/C23H29N3O2S/c1-18(28)19-7-8-23-21(17-19)26(20-5-2-3-6-22(20)29-23)10-4-9-24-11-13-25(14-12-24)15-16-27/h2-3,5-8,17,27H,4,9-16H2,1H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WNTYBHLDCKXEOT-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 4915,
            "identifier": "644215",
            "identifier_type": "int",
            "name": "LOC644215",
            "properties": {
                "url": "http://identifiers.org/ncbigene/644215",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "uncharacterized LOC644215"
            },
            "metanode": "Gene"
        },
        {
            "id": 4916,
            "identifier": "GO:0045145",
            "identifier_type": "str",
            "name": "single-stranded DNA 5'-3' exodeoxyribonuclease activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045145",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 4917,
            "identifier": "GO:0051057",
            "identifier_type": "str",
            "name": "positive regulation of small GTPase mediated signal transduction",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051057",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4918,
            "identifier": "8292",
            "identifier_type": "int",
            "name": "COLQ",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8292",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase"
            },
            "metanode": "Gene"
        },
        {
            "id": 4919,
            "identifier": "GO:0004914",
            "identifier_type": "str",
            "name": "interleukin-5 receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004914",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 4920,
            "identifier": "UBERON:0000959",
            "identifier_type": "str",
            "name": "optic chiasma",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0000959",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D009897"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 4921,
            "identifier": "GO:0006367",
            "identifier_type": "str",
            "name": "transcription initiation from RNA polymerase II promoter",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006367",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4922,
            "identifier": "C0025160",
            "identifier_type": "str",
            "name": "Megacolon",
            "properties": {
                "url": "http://identifiers.org/umls/C0025160",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 4923,
            "identifier": "PC7_7731",
            "identifier_type": "str",
            "name": "Synthesis of DNA",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 4924,
            "identifier": "10745",
            "identifier_type": "int",
            "name": "PHTF1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10745",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "putative homeodomain transcription factor 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4925,
            "identifier": "643664",
            "identifier_type": "int",
            "name": "SLC35G6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/643664",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "solute carrier family 35, member G6"
            },
            "metanode": "Gene"
        },
        {
            "id": 4926,
            "identifier": "DB00287",
            "identifier_type": "str",
            "name": "Travoprost",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00287",
                "inchi": "InChI=1S/C26H35F3O6/c1-17(2)35-25(33)11-6-4-3-5-10-21-22(24(32)15-23(21)31)13-12-19(30)16-34-20-9-7-8-18(14-20)26(27,28)29/h3,5,7-9,12-14,17,19,21-24,30-32H,4,6,10-11,15-16H2,1-2H3/b5-3-,13-12+/t19-,21-,22-,23+,24-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=MKPLKVHSHYCHOC-AHTXBMBWSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 4927,
            "identifier": "GO:0033563",
            "identifier_type": "str",
            "name": "dorsal/ventral axon guidance",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033563",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4928,
            "identifier": "GO:0016574",
            "identifier_type": "str",
            "name": "histone ubiquitination",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016574",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4929,
            "identifier": "GO:0004307",
            "identifier_type": "str",
            "name": "ethanolaminephosphotransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004307",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 4930,
            "identifier": "84901",
            "identifier_type": "int",
            "name": "NFATC2IP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84901",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 4931,
            "identifier": "GO:0003338",
            "identifier_type": "str",
            "name": "metanephros morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003338",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4932,
            "identifier": "64858",
            "identifier_type": "int",
            "name": "DCLRE1B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64858",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "DNA cross-link repair 1B"
            },
            "metanode": "Gene"
        },
        {
            "id": 4933,
            "identifier": "7032",
            "identifier_type": "int",
            "name": "TFF2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7032",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "trefoil factor 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 4934,
            "identifier": "GO:0072183",
            "identifier_type": "str",
            "name": "negative regulation of nephron tubule epithelial cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072183",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 4935,
            "identifier": "85318",
            "identifier_type": "int",
            "name": "BAGE3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/85318",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "B melanoma antigen family, member 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 4936,
            "identifier": "3090",
            "identifier_type": "int",
            "name": "HIC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3090",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "hypermethylated in cancer 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 4937,
            "identifier": "1736",
            "identifier_type": "int",
            "name": "DKC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1736",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "dyskeratosis congenita 1, dyskerin"
            },
            "metanode": "Gene"
        },
        {
            "id": 4938,
            "identifier": "55299",
            "identifier_type": "int",
            "name": "BRIX1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55299",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "BRX1, biogenesis of ribosomes"
            },
            "metanode": "Gene"
        }
    ]
}